Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 6.3e-146 520.8 266 100.0
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 2.6e-99 365.9 268 68.3
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 3.5e-96 355.5 268 66.0
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 1.3e-90 337.0 268 63.1
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 1.3e-90 337.0 268 63.1
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 4.9e-90 335.1 268 64.2
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 8.3e-90 334.3 268 62.3
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.1e-89 334.0 268 62.7
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 1.4e-89 333.6 268 64.6
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 1.9e-89 333.2 268 62.7
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 2.4e-89 332.8 268 64.9
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 3.2e-89 332.4 268 63.4
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 3.2e-89 332.4 268 63.1
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 3.2e-89 332.4 268 61.9
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 4.1e-89 332.0 268 63.1
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 5.4e-89 331.6 268 61.9
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 5.4e-89 331.6 268 63.1
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 7.0e-89 331.3 268 61.9
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 9.2e-89 330.9 268 62.7
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 1.6e-88 330.1 269 63.9
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.0e-88 329.7 268 61.9
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 2.0e-88 329.7 268 61.6
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 2.7e-88 329.3 268 61.6
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 3.5e-88 328.9 268 62.3
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 4.6e-88 328.6 268 61.9
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 4.6e-88 328.6 268 61.6
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 6.0e-88 328.2 268 63.4
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 6.0e-88 328.2 268 61.6
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 7.8e-88 327.8 268 61.9
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 7.8e-88 327.8 268 61.6
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 1.0e-87 327.4 268 61.6
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 1.0e-87 327.4 268 62.7
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 1.3e-87 327.0 268 61.2
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 1.3e-87 327.0 268 60.8
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 1.3e-87 327.0 268 61.6
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 1.7e-87 326.6 272 60.7
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 1.7e-87 326.6 268 61.6
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 2.3e-87 326.2 268 62.7
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 2.3e-87 326.2 268 61.6
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.0e-87 325.9 268 61.6
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 3.0e-87 325.9 268 61.2
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 3.0e-87 325.9 268 61.9
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 3.0e-87 325.9 268 61.2
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 3.9e-87 325.5 268 62.7
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 3.9e-87 325.5 268 61.6
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 3.9e-87 325.5 268 61.6
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 5.0e-87 325.1 268 61.2
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 5.0e-87 325.1 267 61.8
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 5.0e-87 325.1 268 61.9
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 6.6e-87 324.7 268 61.2
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 8.6e-87 324.3 268 61.2
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 8.6e-87 324.3 267 61.4
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 1.1e-86 323.9 267 61.4
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 1.1e-86 323.9 268 61.6
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 1.5e-86 323.6 268 61.2
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 1.5e-86 323.6 268 61.9
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 1.5e-86 323.6 268 61.2
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 1.9e-86 323.2 268 61.2
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 1.9e-86 323.2 264 61.7
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 1.9e-86 323.2 268 61.6
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 1.9e-86 323.2 268 61.9
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.9e-86 323.2 268 60.8
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 2.5e-86 322.8 268 60.4
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 2.5e-86 322.8 268 60.8
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 3.3e-86 322.4 268 60.8
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 4.3e-86 322.0 268 60.4
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 4.3e-86 322.0 268 60.8
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 4.3e-86 322.0 268 60.4
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 5.6e-86 321.6 266 60.5
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 7.3e-86 321.2 268 60.8
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 7.3e-86 321.2 269 60.6
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 7.3e-86 321.2 268 60.8
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 7.3e-86 321.2 268 61.2
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 9.5e-86 320.9 268 60.1
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 1.2e-85 320.5 268 60.1
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 1.2e-85 320.5 268 60.4
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 1.2e-85 320.5 268 60.4
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 1.2e-85 320.5 268 59.7
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 1.6e-85 320.1 268 61.9
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 3.6e-85 318.9 268 60.1
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 3.6e-85 318.9 268 60.4
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 4.7e-85 318.5 268 59.7
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 4.7e-85 318.5 268 60.4
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 8.1e-85 317.8 268 60.8
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 1.1e-84 317.4 268 59.7
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 1.4e-84 317.0 268 59.3
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 1.8e-84 316.6 268 59.3
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 1.8e-84 316.6 268 59.7
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 1.8e-84 316.6 268 60.1
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 1.8e-84 316.6 268 61.2
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 1.8e-84 316.6 268 59.3
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 1.8e-84 316.6 268 59.3
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 2.3e-84 316.2 268 59.0
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 3.1e-84 315.8 268 61.2
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 4.0e-84 315.5 268 61.2
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 4.0e-84 315.5 268 61.2
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 5.2e-84 315.1 268 59.0
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 5.2e-84 315.1 268 59.0
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 5.2e-84 315.1 268 59.7
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 5.2e-84 315.1 268 59.0
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 5.2e-84 315.1 268 60.8
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 5.2e-84 315.1 268 59.0
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 8.9e-84 314.3 268 58.6
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 8.9e-84 314.3 268 58.6
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 8.9e-84 314.3 268 58.6
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 8.9e-84 314.3 268 58.6
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 8.9e-84 314.3 268 60.8
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 1.2e-83 313.9 268 58.6
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.2e-83 313.9 268 60.8
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.2e-83 313.9 266 60.9
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 1.5e-83 313.5 268 58.6
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 1.5e-83 313.5 268 58.6
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 1.5e-83 313.5 268 58.6
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 1.5e-83 313.5 268 60.1
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 2.0e-83 313.2 268 60.4
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 2.0e-83 313.2 268 57.8
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 2.0e-83 313.2 268 58.2
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 2.0e-83 313.2 268 58.2
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.6e-83 312.8 268 60.8
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 4.4e-83 312.0 268 59.7
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 4.4e-83 312.0 268 58.2
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 4.4e-83 312.0 268 59.3
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 9.9e-83 310.8 268 59.7
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 9.9e-83 310.8 268 60.1
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 1.3e-82 310.5 268 57.5
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 1.7e-82 310.1 268 57.5
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 4.9e-82 308.5 290 56.2
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 1.4e-81 307.0 268 59.3
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 1.9e-81 306.6 268 59.7
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.4e-81 305.1 259 58.7
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 9.2e-81 304.3 268 57.8
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 2.7e-80 302.8 268 57.8
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 3.5e-80 302.4 318 51.9
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 3.5e-80 302.4 268 58.2
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 1.9e-78 296.6 360 47.2
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 1.9e-78 296.6 278 54.7
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 4.3e-78 295.4 309 52.8
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 6.4e-74 281.6 268 58.2
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 7.1e-73 278.1 268 56.0
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 1.0e-71 274.2 231 61.0
vmacro13883 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 2.8e-69 266.2 249 56.6
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 2.4e-68 263.1 266 53.8
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 2.0e-67 260.0 264 53.0
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.2e-66 256.5 295 48.5
Cre17.g708300 Chlamydomonas reinhardtii HOM05D003558 ORTHO05D004392 2.9e-66 256.1 264 51.1
Cfa011973 Carpinus fangiana HOM05D003558 ORTHO05D004392 4.3e-62 242.3 184 69.0
Ca_13177_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 7.3e-62 241.5 184 67.9
PRCOL_00000075 Prasinoderma coloniale HOM05D003558 ORTHO05D004392 7.3e-62 241.5 244 50.0
Ca_18846_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 1.6e-61 240.4 189 66.7
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 5.3e-60 235.3 177 66.7
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 4.9e-58 228.8 268 47.8
DCAR_006513 Daucus carota HOM05D003558 ORTHO05D004392 8.4e-58 228.0 183 65.0
MCO10G293 Micromonas commoda HOM05D003558 ORTHO05D004392 5.4e-57 225.3 266 46.2
Peaxi162Scf00117g00921 Petunia axillaris HOM05D003558 ORTHO05D004392 9.3e-57 224.6 193 58.5
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 5.1e-55 218.8 268 46.6
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.3e-45 187.6 178 53.9
Haze_09103 Corylus avellana HOM05D003558 ORTHO05D004392 1.6e-45 187.2 122 77.9
RcHm_v2.0_Chr2g0138681 Rosa chinensis HOM05D003558 ORTHO05D004392 3.1e-44 183.0 265 45.3
FvH4_6g31620 Fragaria vesca HOM05D003558 ORTHO05D004392 2.2e-42 176.8 265 43.0
Eucgr.E00961 Eucalyptus grandis HOM05D003558 ORTHO05D004392 9.3e-41 171.4 122 68.0
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 4.6e-40 169.1 190 48.9
FAN09G0436 Fragaria x ananassa HOM05D003558 ORTHO05D004392 6.0e-40 168.7 265 42.3
Nitab4.5_0007285g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.8e-39 167.2 214 45.8
Eucgr.E00934 Eucalyptus grandis HOM05D003558 ORTHO05D004392 5.1e-39 165.6 178 48.9
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 5.7e-38 162.2 162 54.9
Aqoxy2G02711 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 5.7e-30 135.6 116 54.3
CSS0010814 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.2e-29 133.7 122 58.2
Glyma.03G059800 Glycine max HOM05D000140 ORTHO05D004392 1.2e-27 127.9 108 52.8
Actinidia22185 Actinidia chinensis HOM05D003558 ORTHO05D005715 1.4e-25 120.9 125 49.6
Aa31LG9G160 Aethionema arabicum HOM05D003558 ORTHO05D004392 1.5e-14 84.3 90 46.7
CSS0046828 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-14 84.3 52 76.9
Sc07g0010140 Simmondsia chinensis HOM05D003558 ORTHO05D004392 5.7e-14 82.4 60 70.0
CSS0029558 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.3e-12 75.9 60 63.3
CSS0047737 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.2e-11 74.7 56 66.1
CSS0000450 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.9e-10 70.1 48 70.8
Psat6g100040 Pisum sativum HOM05D003558 ORTHO05D004392 1.1e-09 68.2 75 49.3
CSS0004905 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.5e-09 65.9 42 73.8
Aqoxy2G02712 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 4.0e-07 59.7 61 49.2
Lsat_1_v5_gn_1_89161 Lactuca sativa HOM05D003558 ORTHO05D230340 2.6e-06 57.0 61 44.3
Eucgr.E00976 Eucalyptus grandis HOM05D003558 ORTHO05D045319 7.5e-06 55.5 43 53.5


User provided reference genes

Program Settings