Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 0.0e+00 1140.2 583 100.0
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.8e-157 560.5 571 54.3
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 4.4e-156 555.8 576 52.3
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 9.1e-154 548.1 576 52.1
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 3.5e-153 546.2 576 52.1
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 1.3e-152 544.3 571 51.5
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 5.0e-152 542.3 565 53.6
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 6.5e-152 542.0 577 51.5
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 6.5e-152 542.0 571 52.5
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 1.4e-151 540.8 574 51.4
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 3.2e-151 539.7 575 52.0
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 5.5e-151 538.9 575 52.5
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 5.5e-151 538.9 573 52.7
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 7.2e-151 538.5 592 51.4
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 2.1e-150 537.0 573 52.0
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 2.7e-150 536.6 571 52.5
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 2.7e-150 536.6 572 51.6
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 3.6e-150 536.2 571 52.2
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.7e-150 535.8 572 52.6
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 6.1e-150 535.4 570 52.1
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 6.1e-150 535.4 572 51.9
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 6.1e-150 535.4 580 50.9
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 1.0e-149 534.6 566 52.5
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 1.0e-149 534.6 572 51.7
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 1.8e-149 533.9 571 51.7
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 1.8e-149 533.9 571 51.3
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 3.9e-149 532.7 565 52.6
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 3.9e-149 532.7 571 51.3
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 8.8e-149 531.6 575 51.7
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 1.5e-148 530.8 565 52.2
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 2.0e-148 530.4 572 51.7
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 3.3e-148 529.6 571 51.8
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 3.3e-148 529.6 572 51.2
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 3.3e-148 529.6 572 51.2
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 3.3e-148 529.6 571 52.0
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 3.3e-148 529.6 571 51.8
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 4.4e-148 529.3 571 52.4
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 4.4e-148 529.3 571 51.8
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 4.4e-148 529.3 572 50.9
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 5.7e-148 528.9 577 51.6
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 7.4e-148 528.5 571 52.5
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 9.7e-148 528.1 573 52.0
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.7e-147 527.3 587 50.9
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 2.2e-147 526.9 571 51.0
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 2.8e-147 526.6 571 52.2
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 3.7e-147 526.2 570 51.6
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 6.3e-147 525.4 566 52.5
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 1.4e-146 524.2 571 52.5
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.4e-146 524.2 571 51.5
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 2.4e-146 523.5 570 51.8
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 2.4e-146 523.5 571 52.2
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 3.1e-146 523.1 571 50.8
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 3.1e-146 523.1 576 50.3
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 4.1e-146 522.7 582 51.4
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 4.1e-146 522.7 571 51.1
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 4.1e-146 522.7 579 50.4
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 5.3e-146 522.3 578 50.7
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 1.2e-145 521.2 572 51.7
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.2e-145 521.2 575 50.6
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 2.0e-145 520.4 571 51.5
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 2.0e-145 520.4 572 50.2
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 2.6e-145 520.0 570 50.2
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.5e-145 519.6 571 49.6
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 3.5e-145 519.6 571 52.4
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.5e-145 519.6 570 51.4
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 4.5e-145 519.2 602 48.2
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 4.5e-145 519.2 572 51.0
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 7.7e-145 518.5 571 52.4
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.3e-144 517.7 571 51.1
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 1.7e-144 517.3 571 50.6
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 2.9e-144 516.5 561 51.5
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 3.8e-144 516.2 570 50.7
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 3.8e-144 516.2 561 51.5
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 3.8e-144 516.2 591 49.9
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 5.0e-144 515.8 580 49.1
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.5e-143 514.2 565 51.5
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.5e-143 514.2 570 51.2
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.5e-143 514.2 570 51.2
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.2e-143 511.9 590 49.8
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.6e-142 510.8 566 50.9
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 1.6e-142 510.8 570 51.4
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 2.1e-142 510.4 573 49.2
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 1.8e-141 507.3 572 49.7
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 1.8e-141 507.3 598 49.3
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.0e-141 506.5 590 49.3
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 4.0e-141 506.1 572 50.3
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 5.2e-141 505.8 570 51.4
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 8.8e-141 505.0 528 52.3
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 1.2e-140 504.6 567 50.6
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 1.2e-140 504.6 567 50.6
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 1.2e-140 504.6 597 48.7
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 3.4e-140 503.1 567 50.6
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 7.5e-140 501.9 565 49.9
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.8e-139 500.0 567 50.4
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 6.3e-139 498.8 592 48.5
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 8.3e-139 498.4 576 48.4
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 2.4e-138 496.9 575 49.2
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.6e-137 494.2 584 49.1
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 1.6e-137 494.2 574 50.7
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 3.5e-137 493.0 548 50.7
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 1.7e-136 490.7 529 51.4
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 2.5e-135 486.9 575 49.6
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 9.4e-135 485.0 571 49.2
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.7e-134 483.4 571 49.0
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.8e-133 480.7 570 50.0
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 4.0e-133 479.6 579 47.0
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 2.8e-131 473.4 532 51.1
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 3.7e-131 473.0 571 48.0
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.8e-130 470.7 571 48.0
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 1.3e-128 464.5 571 47.8
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 8.6e-128 461.8 571 48.0
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 1.5e-127 461.1 538 48.7
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.6e-126 456.4 528 49.4
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.0e-125 454.9 572 46.9
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 3.0e-125 453.4 557 47.6
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 7.0e-122 442.2 565 46.9
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 3.1e-117 426.8 563 46.9
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 2.2e-107 394.0 579 42.3
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 7.8e-105 385.6 457 48.1
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 3.9e-104 383.3 474 47.0
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 1.1e-101 375.2 412 49.8
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 1.8e-101 374.4 485 45.4
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 2.9e-91 340.5 417 48.0
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 3.8e-91 340.1 575 39.7
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 3.8e-91 340.1 431 47.8
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 1.4e-90 338.2 385 50.6
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 7.1e-74 282.7 323 51.4
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 2.1e-70 271.2 441 40.1
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.1e-65 254.6 265 49.4
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 5.5e-58 229.9 588 31.6
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 2.1e-49 201.4 233 50.6
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 4.1e-45 187.2 305 37.7
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.3e-35 155.6 188 50.5
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 7.7e-28 129.8 120 55.8
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.9e-27 127.9 154 48.1
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.4e-24 119.0 315 29.8
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 5.2e-24 117.1 204 40.7
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 5.2e-24 117.1 213 35.7
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 1.2e-23 115.9 113 54.0
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 2.0e-23 115.2 96 58.3
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 2.2e-22 111.7 104 51.0
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.1e-21 107.8 149 45.0
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 3.8e-19 100.9 94 53.2
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 4.7e-17 94.0 207 33.8
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 2.6e-15 88.2 87 47.1
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.2e-12 79.3 99 43.4
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 1.6e-12 79.0 77 45.5
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 7.7e-12 76.6 96 47.9
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.9e-06 58.2 72 38.9


User provided reference genes

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