Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 0.0e+00 2535.4 1397 100.0
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 7.3e-44 184.1 517 26.5
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 1.2e-41 176.8 508 35.0
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 1.2e-41 176.8 510 29.0
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 1.5e-41 176.4 507 33.1
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 2.6e-41 175.6 508 34.6
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.6e-41 175.6 705 26.1
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 7.6e-41 174.1 507 32.7
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 7.6e-41 174.1 505 29.1
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 1.7e-40 172.9 507 34.3
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 2.2e-40 172.6 508 28.5
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 2.2e-40 172.6 506 27.1
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 1.1e-39 170.2 550 27.1
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.2e-38 166.8 504 26.4
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 1.2e-38 166.8 504 26.4
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 6.0e-38 164.5 534 31.6
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 1.7e-37 162.9 494 30.2
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 3.0e-37 162.2 504 26.4
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 5.1e-37 161.4 509 32.6
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 6.6e-37 161.0 506 26.9
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 8.6e-37 160.6 504 26.2
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 1.5e-36 159.8 510 27.1
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 1.5e-36 159.8 499 26.3
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 2.5e-36 159.1 523 26.6
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 2.5e-36 159.1 506 34.2
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 5.6e-36 157.9 531 26.2
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 9.6e-36 157.1 688 29.7
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 1.2e-35 156.8 525 26.3
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 2.1e-35 156.0 550 27.1
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 3.6e-35 155.2 502 26.9
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 4.7e-35 154.8 510 26.1
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 4.7e-35 154.8 502 26.9
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 4.7e-35 154.8 703 30.3
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 8.1e-35 154.1 497 27.4
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 1.1e-34 153.7 497 27.4
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 1.1e-34 153.7 504 26.6
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.8e-34 152.9 502 26.7
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 2.4e-34 152.5 497 27.4
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 4.0e-34 151.8 498 32.5
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 5.2e-34 151.4 509 25.7
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 6.9e-34 151.0 519 26.2
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 6.9e-34 151.0 530 25.5
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 1.5e-33 149.8 512 27.0
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 1.5e-33 149.8 504 29.4
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 2.0e-33 149.4 673 25.4
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 2.0e-33 149.4 718 27.9
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 2.0e-33 149.4 497 26.4
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 3.4e-33 148.7 504 27.0
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 9.9e-33 147.1 510 25.7
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 9.9e-33 147.1 712 28.5
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 1.7e-32 146.4 497 25.6
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 1.7e-32 146.4 497 26.0
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 1.7e-32 146.4 497 26.0
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 1.7e-32 146.4 497 26.0
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 1.7e-32 146.4 540 25.7
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 2.2e-32 146.0 697 24.4
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 2.2e-32 146.0 505 25.9
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 2.2e-32 146.0 505 25.3
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 2.2e-32 146.0 519 25.8
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 2.9e-32 145.6 506 25.7
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 2.9e-32 145.6 514 26.1
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 2.9e-32 145.6 545 26.6
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 3.8e-32 145.2 519 24.3
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 3.8e-32 145.2 511 26.0
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.9e-32 144.8 410 27.8
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 4.9e-32 144.8 517 25.9
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 8.4e-32 144.1 507 25.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 8.4e-32 144.1 527 25.4
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 8.4e-32 144.1 560 24.8
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 8.4e-32 144.1 483 31.7
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 1.1e-31 143.7 505 24.2
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 1.4e-31 143.3 531 26.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 1.4e-31 143.3 505 24.4
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 1.9e-31 142.9 551 25.6
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 2.4e-31 142.5 554 25.3
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 3.2e-31 142.1 529 28.5
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 4.2e-31 141.7 554 25.1
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 4.2e-31 141.7 641 24.0
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 4.2e-31 141.7 507 26.0
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 9.3e-31 140.6 505 28.9
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 1.2e-30 140.2 524 25.2
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 1.2e-30 140.2 415 28.7
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.6e-30 139.8 556 31.5
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 1.6e-30 139.8 629 24.8
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 2.1e-30 139.4 640 24.8
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 3.5e-30 138.7 732 27.9
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 3.5e-30 138.7 726 27.0
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 4.6e-30 138.3 498 31.5
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 6.0e-30 137.9 498 25.7
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 7.8e-30 137.5 543 24.7
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 1.3e-29 136.7 505 27.3
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.3e-29 136.7 681 23.9
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.3e-29 136.0 720 24.2
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 3.9e-29 135.2 681 24.2
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 6.6e-29 134.4 450 25.6
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 8.7e-29 134.0 659 24.6
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 7.3e-28 131.0 502 24.7
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 1.6e-27 129.8 686 23.6
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.8e-27 129.0 520 24.0
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 6.2e-27 127.9 509 23.8
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-25 123.2 507 29.8
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 7.6e-25 120.9 714 24.6
CBR_g4341 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-23 115.9 66 89.4
CBR_g45329 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-23 114.8 66 86.4
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 5.4e-23 114.8 756 24.3
CBR_g11917 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-23 114.0 64 89.1
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 2.1e-22 112.8 203 36.0
CBR_g55369 Chara braunii HOM05D000019 ORTHO05D011373 3.5e-22 112.1 64 89.1
CBR_g52113 Chara braunii HOM05D000019 ORTHO05D011373 6.0e-22 111.3 66 83.3
CBR_g29452 Chara braunii HOM05D000019 ORTHO05D011373 7.9e-22 110.9 109 62.4
CBR_g54635 Chara braunii HOM05D000019 ORTHO05D001702 7.9e-22 110.9 64 82.8
CBR_g16105 Chara braunii HOM05D000019 ORTHO05D011373 1.0e-21 110.5 66 84.8
CBR_g51770 Chara braunii HOM05D000019 ORTHO05D011373 1.0e-21 110.5 64 85.9
CBR_g40564 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-21 109.8 66 81.8
CBR_g50056 Chara braunii HOM05D000019 ORTHO05D011373 2.3e-21 109.4 65 81.5
CBR_g23204 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-21 108.6 66 81.8
CBR_g37812 Chara braunii HOM05D000019 ORTHO05D011373 3.9e-21 108.6 66 81.8
CBR_g31126 Chara braunii HOM05D000019 ORTHO05D011373 6.7e-21 107.8 64 82.8
CBR_g5583 Chara braunii HOM05D000019 ORTHO05D000353 6.7e-21 107.8 66 80.3
CBR_g10850 Chara braunii HOM05D000019 ORTHO05D011373 8.7e-21 107.5 63 85.7
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.1e-20 107.1 378 24.9
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.5e-20 106.7 208 34.6
CBR_g28921 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-20 106.3 66 78.8
CBR_g3566 Chara braunii HOM05D000572 ORTHO05D000840 2.5e-20 105.9 64 79.7
CBR_g36853 Chara braunii HOM05D000019 ORTHO05D011373 9.6e-20 104.0 64 76.6
CBR_g64866 Chara braunii HOM05D000019 ORTHO05D011373 9.6e-20 104.0 66 80.3
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 9.6e-20 104.0 573 23.4
CBR_g27853 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-19 103.2 64 76.6
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.6e-19 103.2 209 32.1
CBR_g17849 Chara braunii HOM05D000019 ORTHO05D011373 2.1e-19 102.8 64 75.0
CBR_g12252 Chara braunii HOM05D000019 ORTHO05D011373 1.1e-18 100.5 64 71.9
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 1.1e-18 100.5 674 26.7
CBR_g27919 Chara braunii HOM05D003988 ORTHO05D011373 1.4e-18 100.1 64 73.4
CBR_g32480 Chara braunii HOM05D000129 ORTHO05D000144 1.8e-18 99.8 64 73.4
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 1.8e-18 99.8 200 32.5
CBR_g209 Chara braunii HOM05D000019 ORTHO05D011373 3.1e-18 99.0 62 80.6
CBR_g22149 Chara braunii HOM05D000019 ORTHO05D011373 4.0e-18 98.6 62 82.3
CBR_g3441 Chara braunii HOM05D000019 ORTHO05D011373 4.0e-18 98.6 64 71.9
CBR_g21075 Chara braunii HOM05D000019 ORTHO05D011373 5.3e-18 98.2 66 80.3
CBR_g45693 Chara braunii HOM05D000076 ORTHO05D000048 5.3e-18 98.2 62 77.4
CBR_g31006 Chara braunii HOM05D000019 ORTHO05D011373 6.9e-18 97.8 64 71.9
CBR_g38331 Chara braunii HOM05D000019 ORTHO05D011373 6.9e-18 97.8 66 72.7
CBR_g37499 Chara braunii HOM05D006091 ORTHO05D000002 9.0e-18 97.4 63 71.4
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.5e-17 96.7 59 81.4
CBR_g49710 Chara braunii HOM05D000019 ORTHO05D011373 2.0e-17 96.3 64 70.3
CBR_g31009 Chara braunii HOM05D000019 ORTHO05D011373 2.6e-17 95.9 64 70.3
CBR_g48173 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-17 95.9 64 71.9
CBR_g64841 Chara braunii HOM05D008123 ORTHO05D000800 2.6e-17 95.9 156 41.0
CBR_g31166 Chara braunii HOM05D000019 ORTHO05D011373 3.8e-16 92.0 58 82.8
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 4.9e-16 91.7 191 33.5
CBR_g46417 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-16 91.3 65 69.2
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.4e-15 90.1 313 25.9
CBR_g4634 Chara braunii HOM05D003330 ORTHO05D003805 1.9e-15 89.7 63 63.5
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 6.0e-14 84.7 132 35.6
CBR_g61 Chara braunii HOM05D000019 ORTHO05D011373 6.0e-14 84.7 61 72.1
CBR_g22466 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-13 84.0 58 69.0
CBR_g46879 Chara braunii HOM05D017030 ORTHO05D011373 1.0e-13 84.0 55 76.4
CBR_g26258 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-11 75.1 55 65.5
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 6.9e-10 71.2 43 79.1
CBR_g19361 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-09 70.5 45 77.8
CBR_g31388 Chara braunii HOM05D000019 ORTHO05D011373 5.8e-09 68.2 45 73.3
CBR_g22856 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-08 67.0 45 71.1
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 4.9e-08 65.1 229 24.5
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.4e-07 63.5 198 26.8


User provided reference genes

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