Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 9.2e-237 823.2 415 100.0
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.4e-75 287.7 246 61.0
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 3.1e-75 286.6 281 54.1
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 4.1e-75 286.2 274 54.4
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 2.0e-74 283.9 254 57.9
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 3.4e-74 283.1 242 57.4
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 2.2e-73 280.4 246 58.9
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.9e-73 280.0 246 58.1
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 5.0e-73 279.3 244 58.6
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.0e-73 279.3 244 58.6
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 5.0e-73 279.3 294 51.0
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.0e-73 279.3 241 58.9
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 8.5e-73 278.5 245 59.2
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.1e-72 278.1 244 58.2
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.1e-72 278.1 246 57.3
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-72 278.1 240 59.2
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-72 278.1 242 59.1
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 3.2e-72 276.6 243 58.0
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 4.2e-72 276.2 244 57.0
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 4.2e-72 276.2 233 57.9
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 7.2e-72 275.4 255 56.5
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 7.2e-72 275.4 242 57.9
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 9.3e-72 275.0 255 56.5
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 9.3e-72 275.0 230 60.4
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 9.3e-72 275.0 229 59.8
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.2e-71 274.6 244 57.8
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.1e-71 273.9 243 55.6
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 2.7e-71 273.5 246 55.7
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.7e-71 273.5 271 54.2
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 3.6e-71 273.1 272 54.4
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 4.6e-71 272.7 242 59.1
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 4.6e-71 272.7 246 56.5
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 6.1e-71 272.3 245 57.1
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 6.1e-71 272.3 245 56.7
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 7.9e-71 271.9 230 59.6
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 7.9e-71 271.9 271 53.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.0e-70 271.6 248 55.6
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.0e-70 271.6 240 58.3
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.0e-70 271.6 289 51.6
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 1.3e-70 271.2 243 57.6
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.8e-70 270.8 272 53.7
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.3e-70 270.4 246 57.7
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 2.3e-70 270.4 248 55.6
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.3e-70 270.4 234 57.3
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 3.9e-70 269.6 226 58.4
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 5.1e-70 269.2 237 56.5
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 5.1e-70 269.2 243 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 6.7e-70 268.9 333 45.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 6.7e-70 268.9 253 53.8
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 8.7e-70 268.5 257 54.5
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 1.1e-69 268.1 241 56.4
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.5e-69 267.7 245 55.1
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.9e-69 267.3 238 58.0
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 2.5e-69 266.9 278 50.7
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 2.5e-69 266.9 239 56.9
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 2.5e-69 266.9 241 56.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 3.3e-69 266.5 257 54.9
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 3.3e-69 266.5 243 57.2
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 5.7e-69 265.8 247 55.9
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 7.4e-69 265.4 236 57.2
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 7.4e-69 265.4 239 56.9
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 7.4e-69 265.4 243 55.1
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 9.7e-69 265.0 245 56.3
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 9.7e-69 265.0 229 57.6
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.6e-68 264.2 245 55.9
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.6e-68 264.2 233 57.1
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.2e-68 263.8 232 59.1
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 2.8e-68 263.5 238 57.6
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.8e-68 263.5 246 56.1
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 3.7e-68 263.1 237 56.5
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 3.7e-68 263.1 244 54.9
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.8e-68 262.7 239 56.5
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 6.3e-68 262.3 239 56.5
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 6.3e-68 262.3 242 55.0
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 8.2e-68 261.9 239 56.1
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 8.2e-68 261.9 242 55.4
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 8.2e-68 261.9 219 59.4
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 8.2e-68 261.9 277 51.3
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.1e-67 261.5 262 52.3
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.1e-67 261.5 243 55.6
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.4e-67 261.2 237 57.0
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.4e-67 261.2 226 59.3
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.4e-67 261.2 227 57.3
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.8e-67 260.8 238 56.3
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 4.1e-67 259.6 239 56.9
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 5.3e-67 259.2 240 55.8
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.2e-66 258.1 239 56.5
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 1.2e-66 258.1 244 54.9
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.5e-66 257.7 228 56.1
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 4.5e-66 256.1 239 55.6
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 4.5e-66 256.1 244 53.7
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.7e-65 254.2 241 54.8
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 2.2e-65 253.8 239 55.2
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 5.5e-64 249.2 207 61.4
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.4e-62 244.6 238 54.2
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 2.3e-62 243.8 208 60.6
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 2.6e-61 240.4 230 55.2
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 9.1e-59 231.9 210 58.1
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 5.9e-58 229.2 202 58.9
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 1.0e-57 228.4 229 56.3
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 5.0e-57 226.1 216 54.6
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.1e-56 224.9 228 52.2
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 2.1e-55 220.7 212 54.7
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 6.1e-55 219.2 245 48.6
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.4e-51 208.0 206 53.9
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.0e-49 201.8 212 51.4
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 3.6e-47 193.4 148 65.5
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 4.0e-46 189.9 135 65.9
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 5.7e-45 186.0 271 41.3
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.4e-43 180.6 168 53.6
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.9e-41 173.7 218 45.4
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.2e-32 142.5 149 52.3
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.9e-25 120.6 86 66.3
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 9.8e-21 105.5 136 42.6
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.4e-19 101.7 110 48.2
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.6e-15 88.2 63 60.3
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 1.6e-15 88.2 83 51.8
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 6.2e-15 86.3 56 67.9
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.1e-14 85.5 68 58.8
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 2.3e-14 84.3 59 64.4
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 9.8e-13 79.0 89 48.3
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 4.1e-11 73.6 63 55.6
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 7.0e-11 72.8 49 65.3
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.2e-10 72.0 67 50.7
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 6.0e-10 69.7 45 68.9
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.3e-09 68.6 47 63.8
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.1e-08 65.5 51 56.9
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 6.2e-07 59.7 65 47.7
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.1e-06 58.9 134 33.6


User provided reference genes

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