Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 5.6e-40 167.2 84 100.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 8.4e-12 73.6 81 49.4
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-11 72.8 81 50.6
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 1.4e-11 72.8 81 50.6
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 1.9e-11 72.4 81 50.6
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 1.9e-11 72.4 81 50.6
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 1.9e-11 72.4 81 50.6
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 1.9e-11 72.4 81 50.6
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 1.9e-11 72.4 81 50.6
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.9e-11 72.4 78 50.0
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-11 72.0 75 49.3
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 2.4e-11 72.0 76 50.0
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 2.4e-11 72.0 70 52.9
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 3.2e-11 71.6 75 49.3
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 3.2e-11 71.6 70 52.9
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 3.2e-11 71.6 77 49.4
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 3.2e-11 71.6 77 48.1
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 3.2e-11 71.6 78 47.4
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 4.1e-11 71.2 75 49.3
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 4.1e-11 71.2 77 48.1
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 5.4e-11 70.9 81 50.6
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 5.4e-11 70.9 77 48.1
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 5.4e-11 70.9 77 48.1
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 5.4e-11 70.9 48 66.7
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 7.1e-11 70.5 67 49.3
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 9.2e-11 70.1 64 54.7
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 1.2e-10 69.7 72 48.6
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 1.2e-10 69.7 78 47.4
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.2e-10 69.7 81 46.9
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 1.6e-10 69.3 77 46.8
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 1.6e-10 69.3 75 48.0
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.6e-10 69.3 67 53.7
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 2.1e-10 68.9 67 49.3
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.1e-10 68.9 80 43.8
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.1e-10 68.9 80 43.8
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 2.7e-10 68.6 60 56.7
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.7e-10 68.6 68 51.5
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.7e-10 68.6 68 51.5
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.7e-10 68.6 68 51.5
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.7e-10 68.6 67 49.3
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 2.7e-10 68.6 69 52.2
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 2.7e-10 68.6 77 46.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.5e-10 68.2 81 46.9
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 3.5e-10 68.2 67 52.2
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 3.5e-10 68.2 67 53.7
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 4.6e-10 67.8 81 43.2
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 4.6e-10 67.8 68 48.5
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 4.6e-10 67.8 74 45.9
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.6e-10 67.8 78 46.2
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.6e-10 67.8 78 46.2
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 4.6e-10 67.8 75 48.0
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 6.0e-10 67.4 78 47.4
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 6.0e-10 67.4 61 49.2
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 7.8e-10 67.0 54 57.4
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 7.8e-10 67.0 54 57.4
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 7.8e-10 67.0 81 42.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 7.8e-10 67.0 81 42.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 7.8e-10 67.0 66 51.5
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 7.8e-10 67.0 78 44.9
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.8e-10 67.0 78 44.9
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 7.8e-10 67.0 78 46.2
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 7.8e-10 67.0 69 52.2
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.0e-09 66.6 67 49.3
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.0e-09 66.6 73 47.9
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.0e-09 66.6 67 47.8
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 1.0e-09 66.6 67 50.7
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.0e-09 66.6 70 48.6
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.0e-09 66.6 68 47.1
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.0e-09 66.6 67 52.2
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 1.3e-09 66.2 70 47.1
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.3e-09 66.2 78 47.4
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.3e-09 66.2 78 44.9
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.3e-09 66.2 78 43.6
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.3e-09 66.2 74 47.3
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.7e-09 65.9 68 50.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.7e-09 65.9 68 48.5
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.7e-09 65.9 70 50.0
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.7e-09 65.9 79 45.6
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.7e-09 65.9 77 44.2
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.7e-09 65.9 79 46.8
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.7e-09 65.9 70 48.6
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 2.3e-09 65.5 75 41.3
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 2.3e-09 65.5 72 45.8
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 3.0e-09 65.1 66 50.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 3.0e-09 65.1 70 47.1
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 3.0e-09 65.1 60 53.3
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.0e-09 65.1 67 46.3
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 3.0e-09 65.1 62 51.6
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 3.0e-09 65.1 77 46.8
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 3.0e-09 65.1 79 45.6
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.9e-09 64.7 66 48.5
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.9e-09 64.7 49 57.1
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.9e-09 64.7 66 48.5
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.9e-09 64.7 66 48.5
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.9e-09 64.7 74 43.2
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.9e-09 64.7 66 48.5
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.9e-09 64.7 66 48.5
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 3.9e-09 64.7 61 49.2
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 3.9e-09 64.7 76 42.1
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.9e-09 64.7 60 51.7
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 3.9e-09 64.7 78 42.3
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 3.9e-09 64.7 50 56.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 3.9e-09 64.7 70 45.7
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 5.1e-09 64.3 66 48.5
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 5.1e-09 64.3 60 50.0
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 5.1e-09 64.3 68 47.1
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 5.1e-09 64.3 54 55.6
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 5.1e-09 64.3 75 45.3
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 6.6e-09 63.9 73 46.6
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 6.6e-09 63.9 80 42.5
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 8.7e-09 63.5 81 45.7
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.7e-09 63.5 59 50.8
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.7e-09 63.5 59 50.8
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 8.7e-09 63.5 84 44.0
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.1e-08 63.2 74 43.2
Mapoly0033s0091 Marchantia polymorpha HOM05D040506 ORTHO05D031183 1.1e-08 63.2 48 54.2
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 1.1e-08 63.2 75 45.3
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 1.5e-08 62.8 78 43.6
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.5e-08 62.8 57 50.9
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 1.5e-08 62.8 49 55.1
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.5e-08 62.8 61 49.2
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 1.9e-08 62.4 69 49.3
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 2.5e-08 62.0 80 45.0
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.5e-08 62.0 72 44.4
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.5e-08 62.0 72 44.4
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 2.5e-08 62.0 72 44.4
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 2.5e-08 62.0 80 42.5
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 2.5e-08 62.0 82 43.9
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 3.3e-08 61.6 62 48.4
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 3.3e-08 61.6 77 40.3
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 3.3e-08 61.6 54 53.7
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 5.6e-08 60.8 69 47.8
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 5.6e-08 60.8 72 43.1
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 5.6e-08 60.8 72 43.1
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 7.3e-08 60.5 59 47.5
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 9.6e-08 60.1 82 46.3
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 9.6e-08 60.1 69 47.8
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 9.6e-08 60.1 69 47.8
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 9.6e-08 60.1 62 48.4
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 9.6e-08 60.1 64 48.4
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 9.6e-08 60.1 59 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2295 Anthoceros agrestis HOM05D040506 ORTHO05D031183 2.1e-07 58.9 50 52.0
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.1e-07 58.9 49 53.1
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 2.8e-07 58.5 77 44.2
MCO02G168 Micromonas commoda HOM05D004752 ORTHO05D005523 3.6e-07 58.2 83 43.4
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 4.7e-07 57.8 63 50.8
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 4.7e-07 57.8 49 53.1
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 6.2e-07 57.4 62 46.8
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 8.1e-07 57.0 64 46.9


User provided reference genes

Program Settings