Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 8.0e-79 297.0 145 100.0
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 6.2e-39 164.5 91 82.4
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 6.2e-39 164.5 91 82.4
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.8e-38 162.9 95 77.9
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 3.1e-38 162.2 91 81.3
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 5.3e-38 161.4 100 75.0
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 6.9e-38 161.0 95 78.9
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 6.9e-38 161.0 90 82.2
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 9.0e-38 160.6 91 79.1
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 9.0e-38 160.6 91 79.1
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 9.0e-38 160.6 91 79.1
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 9.0e-38 160.6 91 80.2
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.2e-37 160.2 91 80.2
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.2e-37 160.2 91 80.2
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.2e-37 160.2 91 79.1
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.2e-37 160.2 91 79.1
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.5e-37 159.8 91 79.1
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 1.5e-37 159.8 92 79.3
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.0e-37 159.5 91 79.1
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.0e-37 159.5 91 78.0
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 2.0e-37 159.5 91 78.0
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.0e-37 159.5 91 79.1
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.0e-37 159.5 91 79.1
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 2.0e-37 159.5 91 79.1
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.0e-37 159.5 91 79.1
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.6e-37 159.1 91 78.0
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 2.6e-37 159.1 89 82.0
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.6e-37 159.1 89 82.0
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 2.6e-37 159.1 91 79.1
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.6e-37 159.1 91 79.1
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 2.6e-37 159.1 91 80.2
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.6e-37 159.1 91 78.0
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.6e-37 159.1 90 78.9
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 3.4e-37 158.7 91 78.0
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 3.4e-37 158.7 91 79.1
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.4e-37 158.7 91 79.1
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 3.4e-37 158.7 91 78.0
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 3.4e-37 158.7 91 78.0
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 3.4e-37 158.7 91 79.1
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.4e-37 158.7 91 75.8
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.4e-37 158.7 89 82.0
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 4.5e-37 158.3 89 79.8
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 79.1
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 79.1
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 4.5e-37 158.3 91 78.0
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 5.8e-37 157.9 89 79.8
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 5.8e-37 157.9 89 79.8
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 5.8e-37 157.9 89 79.8
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 5.8e-37 157.9 89 79.8
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 5.8e-37 157.9 89 79.8
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 5.8e-37 157.9 91 78.0
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 5.8e-37 157.9 91 78.0
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 5.8e-37 157.9 89 80.9
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 7.6e-37 157.5 89 79.8
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 7.6e-37 157.5 91 78.0
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 7.6e-37 157.5 91 76.9
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 9.9e-37 157.1 89 79.8
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 9.9e-37 157.1 91 78.0
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 9.9e-37 157.1 91 76.9
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 9.9e-37 157.1 91 76.9
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.3e-36 156.8 89 78.7
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.3e-36 156.8 89 78.7
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 1.3e-36 156.8 91 76.9
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 1.3e-36 156.8 91 76.9
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.3e-36 156.8 91 78.0
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.3e-36 156.8 91 79.1
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.7e-36 156.4 91 76.9
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.7e-36 156.4 91 79.1
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.7e-36 156.4 91 76.9
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.7e-36 156.4 89 78.7
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 75.8
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 78.0
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 76.9
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 76.9
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 74.7
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 76.9
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 76.9
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 76.9
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 2.2e-36 156.0 89 78.7
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.2e-36 156.0 91 75.8
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 2.2e-36 156.0 89 78.7
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 2.9e-36 155.6 89 79.8
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 76.9
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 75.8
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 76.9
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 75.8
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 75.8
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 78.0
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 78.0
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 78.0
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.9e-36 155.6 91 76.9
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 4.9e-36 154.8 91 75.8
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.9e-36 154.8 94 76.6
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 4.9e-36 154.8 89 78.7
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 4.9e-36 154.8 91 75.8
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 6.4e-36 154.5 91 74.7
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 6.4e-36 154.5 91 74.7
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 8.4e-36 154.1 89 76.4
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.1e-35 153.7 88 78.4
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 1.9e-35 152.9 91 74.7
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.9e-35 152.9 89 79.8
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.2e-34 150.2 85 81.2
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 5.1e-33 144.8 91 74.7
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-32 143.7 88 76.1
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 2.6e-29 132.5 89 68.5
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 4.5e-29 131.7 88 67.0
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.9e-27 126.3 91 64.8
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.3e-25 119.4 70 82.9
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.9e-25 118.6 88 68.2
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.1e-24 117.1 68 80.9
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.1e-24 117.1 68 79.4
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.1e-24 117.1 66 78.8
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.1e-24 117.1 70 78.6
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.5e-24 116.7 68 80.9
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 3.3e-24 115.5 68 77.9
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 3.3e-24 115.5 68 77.9
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 5.6e-24 114.8 68 76.5
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 9.6e-24 114.0 89 60.7
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.3e-23 113.6 91 59.3
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.3e-23 113.6 69 78.3
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.7e-20 103.2 64 78.1
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.8e-14 83.2 48 72.9
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.6e-10 70.1 46 65.2
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.8e-07 59.3 39 61.5


User provided reference genes

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