Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 0.0e+00 1584.3 931 100.0
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.5e-98 363.6 768 33.3
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.7e-93 346.7 767 32.6
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.7e-93 346.7 767 32.6
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.5e-90 338.6 768 33.2
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 7.7e-90 336.3 790 32.8
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 4.2e-88 330.5 764 33.8
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.7e-86 323.2 768 32.7
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.1e-83 314.3 766 32.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 4.1e-83 313.9 765 33.2
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.7e-81 308.5 766 32.0
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 5.5e-80 303.5 762 31.4
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 5.5e-80 303.5 766 32.2
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.2e-80 303.1 767 31.9
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.1e-79 301.6 773 32.6
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.4e-78 298.9 765 31.9
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.8e-78 298.5 766 32.8
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 3.0e-78 297.7 767 31.9
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 5.2e-78 297.0 766 31.9
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 8.8e-78 296.2 762 32.2
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.1e-77 295.8 765 31.6
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 2.6e-77 294.7 768 31.6
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 2.6e-77 294.7 764 31.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 3.3e-77 294.3 776 32.1
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 5.7e-77 293.5 766 31.5
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 7.4e-77 293.1 765 31.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 9.7e-77 292.7 769 32.6
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.7e-76 292.0 770 31.8
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 2.2e-76 291.6 766 31.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 2.2e-76 291.6 769 31.7
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 2.2e-76 291.6 769 30.9
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 2.8e-76 291.2 766 32.0
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.7e-76 290.8 767 30.8
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 3.7e-76 290.8 766 32.2
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 4.8e-76 290.4 767 30.8
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 6.3e-76 290.0 768 31.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 1.4e-75 288.9 769 31.3
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.8e-75 288.5 762 31.4
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.8e-75 288.5 765 31.8
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.8e-75 288.5 769 31.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.4e-75 288.1 764 31.2
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 2.4e-75 288.1 767 31.3
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 7.0e-75 286.6 765 31.1
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 9.1e-75 286.2 778 32.3
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 9.1e-75 286.2 768 32.4
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.2e-74 285.8 772 31.1
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 1.2e-74 285.8 766 32.0
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.6e-74 285.4 768 31.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 2.0e-74 285.0 767 32.7
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 2.0e-74 285.0 766 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.6e-74 284.6 768 31.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.6e-74 284.6 765 31.6
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.6e-74 284.6 783 32.6
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 3.5e-74 284.3 766 31.9
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 3.5e-74 284.3 766 31.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 3.5e-74 284.3 769 31.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 4.5e-74 283.9 766 30.8
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 5.9e-74 283.5 768 32.2
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 7.7e-74 283.1 770 30.9
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 7.7e-74 283.1 767 31.6
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.7e-73 282.0 802 30.7
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.7e-73 282.0 771 32.2
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.2e-73 281.6 765 30.8
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 2.9e-73 281.2 771 30.7
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.9e-73 281.2 772 30.3
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 5.0e-73 280.4 758 31.5
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 8.5e-73 279.6 769 31.2
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-72 278.9 758 31.1
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.5e-72 278.9 765 31.0
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 3.2e-72 277.7 769 31.6
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 5.5e-72 276.9 766 31.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.5e-72 276.9 768 30.3
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.5e-72 276.9 783 31.9
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 9.4e-72 276.2 767 31.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.2e-71 275.8 759 30.8
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.2e-71 275.8 761 31.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 1.6e-71 275.4 770 30.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.6e-71 275.4 772 31.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-71 275.0 758 30.7
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.1e-71 275.0 784 32.0
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.7e-71 274.6 766 31.3
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 2.7e-71 274.6 767 31.3
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 3.6e-71 274.2 769 31.2
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 3.6e-71 274.2 766 30.5
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 6.1e-71 273.5 763 30.4
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.0e-70 272.7 767 31.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.0e-70 272.7 772 31.5
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 2.3e-70 271.6 766 30.7
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 6.7e-70 270.0 758 30.5
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 6.7e-70 270.0 758 30.5
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 8.8e-70 269.6 758 30.5
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.2e-69 269.2 766 30.9
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.6e-69 268.1 761 30.7
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.6e-69 268.1 761 30.7
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 3.3e-69 267.7 768 30.6
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 4.4e-69 267.3 809 30.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.3e-68 265.8 758 30.3
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 2.8e-68 264.6 765 29.5
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.3e-68 263.5 753 31.1
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 9.1e-67 259.6 759 29.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.7e-66 258.1 730 30.8
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.9e-65 254.6 765 29.7
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 3.8e-65 254.2 808 28.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.2e-64 250.8 766 30.3
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.0e-62 246.1 750 29.1
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.8e-62 245.4 741 29.8
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.8e-62 245.4 830 28.7
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 5.2e-62 243.8 760 29.6
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 2.6e-61 241.5 787 28.5
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 4.4e-61 240.7 760 29.5
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.2e-60 238.4 778 28.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 3.7e-60 237.7 766 28.6
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.1e-59 234.6 686 29.9
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 9.1e-59 233.0 661 30.4
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.6e-58 232.3 572 33.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.5e-58 230.7 552 34.2
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 1.7e-57 228.8 576 31.9
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 3.8e-57 227.6 576 33.2
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 8.6e-57 226.5 684 29.4
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 9.5e-56 223.0 762 29.3
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 3.6e-55 221.1 570 32.3
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 6.8e-54 216.9 571 33.6
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 6.3e-52 210.3 501 33.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 5.0e-49 200.7 484 35.5
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.4e-44 183.7 603 30.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 7.0e-43 180.3 544 31.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.1e-30 138.3 760 23.7
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.7e-28 132.5 230 38.7
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.4e-27 128.6 274 35.0
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 3.0e-17 95.1 576 24.7
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 8.7e-17 93.6 241 31.5
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 8.7e-17 93.6 163 35.0
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.9e-16 92.4 179 35.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 3.1e-14 85.1 107 42.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 6.9e-14 84.0 107 40.2
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-11 75.5 234 28.2
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-11 75.5 234 28.2
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 4.2e-11 74.7 234 28.2
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 9.3e-11 73.6 146 31.5
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 4.6e-10 71.2 88 38.6
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.9e-08 65.9 172 29.1
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.3e-08 64.7 220 30.0
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.6e-08 64.3 80 37.5
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.6e-08 64.3 80 37.5


User provided reference genes

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