Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 0.0e+00 2370.5 1387 100.0
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1167.1 1376 46.6
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.3e-290 1003.8 1391 42.1
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 1.7e-274 950.3 1381 39.2
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 9.6e-273 944.5 1381 39.5
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 2.1e-272 943.3 1377 39.6
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 3.6e-272 942.6 1373 40.9
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 1.4e-271 940.6 1375 39.5
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.1e-271 939.5 1382 39.1
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 3.4e-270 936.0 1389 38.7
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 5.8e-270 935.3 1380 39.1
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 1.3e-269 934.1 1378 38.9
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.2e-269 933.3 1389 40.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 3.8e-269 932.6 1376 39.5
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 6.4e-269 931.8 1380 38.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 2.4e-268 929.9 1380 39.2
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 3.2e-268 929.5 1385 38.6
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 3.2e-268 929.5 1388 39.0
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 1.6e-267 927.2 1378 39.2
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 2.7e-267 926.4 1378 39.0
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.7e-267 926.4 1379 38.4
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 2.7e-267 926.4 1389 38.7
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 3.5e-267 926.0 1386 38.8
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.3e-266 924.1 1379 39.4
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 1.3e-266 924.1 1381 38.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 1.7e-266 923.7 1390 38.4
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 3.0e-266 922.9 1403 38.7
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 3.9e-266 922.5 1381 38.9
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 3.9e-266 922.5 1390 38.6
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 8.7e-266 921.4 1380 38.3
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.1e-265 921.0 1403 38.7
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 1.1e-265 921.0 1379 38.9
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 1.5e-265 920.6 1380 39.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 1.9e-265 920.2 1379 38.5
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 2.5e-265 919.8 1394 38.7
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 2.5e-265 919.8 1394 38.7
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 2.5e-265 919.8 1393 39.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 5.6e-265 918.7 1397 38.7
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 1.6e-264 917.1 1389 38.3
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 2.8e-264 916.4 1378 38.9
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 1.4e-263 914.1 1382 38.5
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 1.4e-263 914.1 1375 38.5
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.8e-263 913.7 1379 38.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 2.4e-263 913.3 1392 38.6
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 5.3e-263 912.1 1344 39.1
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 6.9e-263 911.8 1392 37.9
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 6.9e-263 911.8 1380 38.0
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 1.2e-262 911.0 1382 38.3
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 2.0e-262 910.2 1379 38.1
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 2.0e-262 910.2 1399 39.0
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 3.4e-262 909.4 1387 38.4
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 3.4e-262 909.4 1383 38.0
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 3.4e-262 909.4 1387 38.2
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 3.4e-262 909.4 1381 38.3
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 4.5e-262 909.1 1385 38.4
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.7e-261 907.1 1380 38.6
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 2.9e-261 906.4 1383 38.1
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 2.4e-260 903.3 1392 38.3
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 9.3e-260 901.4 1357 38.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 3.5e-259 899.4 1398 38.5
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 4.6e-259 899.0 1381 37.4
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 3.9e-258 896.0 1432 37.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 6.7e-258 895.2 1387 38.9
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 6.7e-258 895.2 1457 37.3
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.5e-257 894.0 1376 38.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 3.3e-257 892.9 1390 37.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 5.6e-257 892.1 1372 37.7
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 7.4e-257 891.7 1375 38.3
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 4.8e-256 889.0 1395 37.3
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 6.2e-256 888.6 1399 37.8
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 8.1e-256 888.3 1378 37.7
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 2.4e-255 886.7 1378 38.6
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 4.0e-255 885.9 1394 38.1
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.0e-255 884.8 1382 38.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 2.6e-254 883.2 1389 37.4
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 7.6e-254 881.7 1417 37.3
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.4e-252 877.5 1381 38.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.4e-252 877.5 1378 37.3
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 2.5e-252 876.7 1391 38.2
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 2.5e-252 876.7 1393 38.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 9.3e-252 874.8 1455 36.2
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 1.8e-250 870.5 1379 38.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 5.1e-250 869.0 1393 37.6
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 6.7e-250 868.6 1393 37.6
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 3.3e-249 866.3 1331 37.8
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 7.4e-249 865.1 1334 37.9
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 4.8e-248 862.4 1295 38.5
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 7.2e-244 848.6 1395 37.3
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 9.3e-244 848.2 1387 36.6
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 4.6e-243 845.9 1415 37.1
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 7.4e-241 838.6 1570 35.0
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 9.0e-239 831.6 1211 40.0
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 3.6e-235 819.7 1392 35.8
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 7.9e-235 818.5 1391 36.1
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.7e-232 809.7 1127 40.6
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.9e-228 797.3 1388 35.5
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 7.2e-228 795.4 1519 33.6
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.3e-224 784.6 1107 40.7
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.5e-220 771.2 1070 40.7
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.1e-219 767.3 1070 40.5
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 5.2e-218 762.7 1411 35.1
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-215 755.0 1422 34.6
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 1.9e-212 744.2 1076 40.1
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 2.7e-211 740.3 1359 35.7
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 3.0e-189 667.2 990 38.5
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 4.1e-183 646.7 899 40.4
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 6.8e-178 629.4 956 38.1
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 9.2e-167 592.4 1191 31.6
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.3e-139 502.3 653 40.1
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 4.2e-135 487.3 594 45.6
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 5.0e-128 463.8 846 34.8
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.5e-124 451.4 733 37.7
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 6.3e-123 446.8 1793 24.3
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 2.5e-111 408.3 553 39.6
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 3.2e-111 407.9 495 42.2
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.7e-108 397.1 891 29.9
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.1e-106 391.3 535 44.9
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.2e-103 380.9 633 32.7
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 9.4e-103 379.8 1584 27.8
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.6e-100 371.7 1402 26.7
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.1e-98 366.3 737 31.6
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 2.0e-89 335.5 1163 26.8
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.4e-82 312.8 300 54.0
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 5.4e-74 284.3 351 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.0e-65 254.2 315 43.8
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.3e-63 248.1 459 36.8
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 7.8e-57 227.3 412 38.1
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.8e-45 189.5 496 27.4
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.8e-45 189.5 158 57.0
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.2e-36 160.2 232 44.0
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 4.5e-28 131.7 249 32.9
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.4e-26 125.9 226 36.3
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 3.7e-22 112.1 203 38.9
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.5e-20 106.7 189 30.7
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 2.6e-20 105.9 164 34.1
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.5e-18 99.4 301 27.6
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.8e-16 93.2 86 53.5
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.9e-15 89.7 113 42.5
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 1.8e-13 83.2 216 35.6
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 6.9e-13 81.3 178 31.5
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 3.4e-12 79.0 217 32.7
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 4.5e-12 78.6 209 24.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.7e-12 77.8 68 47.1
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 2.2e-11 76.3 75 49.3
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 2.9e-11 75.9 64 54.7
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 3.8e-11 75.5 78 46.2
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.1e-10 73.9 50 68.0
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.9e-10 73.2 44 70.5
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 6.1e-09 68.2 320 20.3
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 6.1e-09 68.2 93 34.4
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.4e-08 67.0 54 57.4
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 1.8e-08 66.6 94 40.4
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.7e-06 60.1 63 54.0
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 2.8e-06 59.3 56 44.6
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.8e-06 58.5 102 32.4


User provided reference genes

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