Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 9.3e-78 293.5 152 100.0
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 3.7e-66 255.0 153 88.2
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.7e-31 139.8 138 51.4
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 6.5e-31 137.9 144 48.6
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.5e-30 136.0 134 49.3
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 3.7e-18 95.5 137 38.7
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 4.1e-17 92.0 132 36.4
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 7.0e-17 91.3 127 37.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 9.2e-17 90.9 131 35.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.6e-16 90.1 127 37.0
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 3.5e-16 89.0 131 34.4
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.5e-16 89.0 131 36.6
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 5.9e-16 88.2 132 33.3
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.3e-15 86.3 136 34.6
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.9e-15 85.9 127 34.6
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.9e-15 85.9 127 34.6
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.9e-15 85.9 127 34.6
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.9e-15 85.9 146 32.2
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 5.0e-15 85.1 127 34.6
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 5.0e-15 85.1 127 34.6
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 5.0e-15 85.1 127 34.6
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 5.0e-15 85.1 127 34.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 6.6e-15 84.7 127 34.6
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 6.6e-15 84.7 141 33.3
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.9e-14 83.2 127 37.0
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.9e-14 83.2 133 33.8
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 3.3e-14 82.4 137 31.4
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 3.3e-14 82.4 140 31.4
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.3e-14 82.0 135 32.6
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 5.6e-14 81.6 158 33.5
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 7.3e-14 81.3 140 31.4
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 7.3e-14 81.3 141 31.2
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 9.5e-14 80.9 135 29.6
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 9.5e-14 80.9 136 29.4
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 9.5e-14 80.9 131 32.8
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.6e-13 80.1 131 31.3
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.6e-13 80.1 131 31.3
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.1e-13 79.7 127 31.5
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.1e-13 79.7 105 36.2
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 2.1e-13 79.7 132 28.8
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.8e-13 79.3 132 31.1
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.8e-13 79.3 132 31.1
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.8e-13 79.3 132 31.1
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 3.6e-13 79.0 130 30.0
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 3.6e-13 79.0 135 28.9
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.7e-13 78.6 135 29.6
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 4.7e-13 78.6 132 31.1
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.7e-13 78.6 131 31.3
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 6.1e-13 78.2 138 33.3
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 6.1e-13 78.2 133 33.8
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 8.0e-13 77.8 134 29.9
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 8.0e-13 77.8 145 29.0
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.0e-12 77.4 137 32.8
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.0e-12 77.4 135 29.6
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.0e-12 77.4 133 34.6
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.4e-12 77.0 132 29.5
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.8e-12 76.6 138 31.2
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.8e-12 76.6 136 30.1
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.3e-12 76.3 129 31.0
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 3.0e-12 75.9 135 29.6
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.0e-12 75.9 143 28.7
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.0e-12 75.9 140 31.4
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.0e-12 75.9 140 31.4
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.0e-12 75.5 123 32.5
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.0e-12 75.5 131 30.5
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.2e-12 75.1 124 32.3
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.2e-12 75.1 124 32.3
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 5.2e-12 75.1 132 29.5
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 5.2e-12 75.1 131 33.6
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 5.2e-12 75.1 137 27.7
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 6.8e-12 74.7 133 29.3
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 8.9e-12 74.3 139 26.6
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.2e-11 73.9 124 31.5
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.2e-11 73.9 125 30.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.2e-11 73.9 137 30.7
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.5e-11 73.6 118 33.9
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.5e-11 73.6 134 32.1
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.5e-11 73.6 134 32.1
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.6e-11 72.8 132 28.8
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 3.4e-11 72.4 134 31.3
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.4e-11 72.4 132 27.3
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 4.4e-11 72.0 144 29.9
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 4.4e-11 72.0 130 27.7
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 4.4e-11 72.0 145 29.0
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 5.7e-11 71.6 139 27.3
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 5.7e-11 71.6 133 26.3
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 7.5e-11 71.2 121 31.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 7.5e-11 71.2 142 27.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 9.8e-11 70.9 139 30.2
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 9.8e-11 70.9 134 31.3
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.7e-10 70.1 135 26.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.7e-10 70.1 118 28.8
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 4.9e-10 68.6 133 27.8
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 4.9e-10 68.6 136 26.5
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 4.9e-10 68.6 122 37.7
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 8.3e-10 67.8 133 28.6
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.1e-09 67.4 123 37.4
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.4e-09 67.0 144 28.5
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 2.4e-09 66.2 133 24.8
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 9.2e-09 64.3 123 36.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.2e-08 63.9 107 28.0
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.6e-08 63.5 106 30.2
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.7e-08 62.8 127 31.5
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 6.6e-07 58.2 109 35.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.1e-06 57.4 111 29.7
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-06 57.4 138 29.0
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-06 56.2 101 32.7


User provided reference genes

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