Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3520 Chara braunii HOM05D049607 ORTHO05D043936 2.8e-291 1004.6 525 100.0
PRCOL_00003851 Prasinoderma coloniale HOM05D049607 ORTHO05D043936 8.0e-28 129.4 488 26.6
SMO340G0084 Selaginella moellendorffii HOM05D000807 ORTHO05D000662 3.1e-11 74.3 528 22.9
SGA_v2.0_scaffold58G20320 Striga asiatica HOM05D000807 ORTHO05D000662 5.8e-10 70.1 504 23.2
Glyma.02G310800 Glycine max HOM05D000807 ORTHO05D000662 1.3e-09 68.9 512 24.2
DCAR_006291 Daucus carota HOM05D000807 ORTHO05D000662 2.2e-09 68.2 526 23.8
Glyma.14G002000 Glycine max HOM05D000807 ORTHO05D000662 3.7e-09 67.4 512 24.0
Gohir.A04G125300 Gossypium hirsutum HOM05D000807 ORTHO05D000662 3.7e-09 67.4 529 22.5
Lalb_Chr19g0124211 Lupinus albus HOM05D000807 ORTHO05D000662 6.4e-09 66.6 520 22.1
Gorai.012G158400 Gossypium raimondii HOM05D000807 ORTHO05D000662 1.4e-08 65.5 530 22.8
Mapoly0056s0043 Marchantia polymorpha HOM05D000807 ORTHO05D000662 1.4e-08 65.5 215 27.0
AUR62027138 Chenopodium quinoa HOM05D000807 ORTHO05D000662 1.9e-08 65.1 214 29.0
Thecc.02G046700 Theobroma cacao HOM05D000807 ORTHO05D000662 1.9e-08 65.1 494 23.1
Gohir.D04G170100 Gossypium hirsutum HOM05D000807 ORTHO05D000662 4.1e-08 63.9 530 22.8
unitig_26.g9043 Utricularia gibba HOM05D000807 ORTHO05D000662 5.4e-08 63.5 167 32.9
Zm00001eb320990 Zea mays HOM05D000807 ORTHO05D000662 7.1e-08 63.2 484 21.5
arahy.Tifrunner.gnm1.ann1.TND3PH Arachis hypogaea HOM05D000807 ORTHO05D000662 9.2e-08 62.8 521 21.1
BcaB04g17223 Brassica carinata HOM05D000807 ORTHO05D000662 9.2e-08 62.8 376 23.1
BcaC05g27346 Brassica carinata HOM05D000807 ORTHO05D000662 9.2e-08 62.8 376 23.1
A05p19670 Brassica napus HOM05D000807 ORTHO05D000662 9.2e-08 62.8 376 23.1
C05p32700 Brassica napus HOM05D000807 ORTHO05D000662 9.2e-08 62.8 376 23.1
BolC5t32003H Brassica oleracea HOM05D000807 ORTHO05D000662 9.2e-08 62.8 376 23.1
BraA05t20872Z Brassica rapa HOM05D000807 ORTHO05D000662 9.2e-08 62.8 376 23.1
BraA08t32328Z Brassica rapa HOM05D000807 ORTHO05D000662 9.2e-08 62.8 376 23.1
SMO347G0079 Selaginella moellendorffii HOM05D000807 ORTHO05D000662 9.2e-08 62.8 191 28.8
MBI02_g37284_MAGBIO Magnolia biondii HOM05D000807 ORTHO05D000662 1.2e-07 62.4 217 28.1
Phvul.008G291400 Phaseolus vulgaris HOM05D000807 ORTHO05D000662 1.6e-07 62.0 528 23.5
Sp1g38000 Schrenkiella parvula HOM05D000807 ORTHO05D000662 1.6e-07 62.0 370 23.0
TAR628G0575 Trochodendron aralioides HOM05D000807 ORTHO05D000662 1.6e-07 62.0 216 26.4
MBI08_g19963_MAGBIO Magnolia biondii HOM05D000807 ORTHO05D000662 2.1e-07 61.6 174 33.9
AUR62012938 Chenopodium quinoa HOM05D000807 ORTHO05D000662 3.5e-07 60.8 214 28.0
Potri.009G143400 Populus trichocarpa HOM05D000807 ORTHO05D000662 3.5e-07 60.8 218 27.5
AL7G10250 Arabidopsis lyrata HOM05D000807 ORTHO05D000662 6.0e-07 60.1 185 28.1
AT4G38380 Arabidopsis thaliana HOM05D000807 ORTHO05D000662 6.0e-07 60.1 185 28.6
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 6.0e-07 60.1 185 28.1
CARHR294120 Cardamine hirsuta HOM05D000807 ORTHO05D000662 6.0e-07 60.1 170 31.2
Os09g0548300 Oryza sativa ssp. japonica HOM05D000807 ORTHO05D000662 6.0e-07 60.1 223 27.4
Atru.chr1.1047 Acer truncatum HOM05D000807 ORTHO05D000662 7.8e-07 59.7 523 21.6
BcaC01g01259 Brassica carinata HOM05D000807 ORTHO05D000662 7.8e-07 59.7 376 22.9
BolC3t21310H Brassica oleracea HOM05D000807 ORTHO05D000662 7.8e-07 59.7 376 22.9
CiPaw.06G117800 Carya illinoinensis HOM05D000807 ORTHO05D000662 7.8e-07 59.7 229 28.8
Sabra09G0111200 Salix brachista HOM05D000807 ORTHO05D000662 7.8e-07 59.7 218 27.5
Sp7g37390 Schrenkiella parvula HOM05D000807 ORTHO05D000662 7.8e-07 59.7 170 30.6
Thhalv10024830m.g Eutrema salsugineum HOM05D000807 ORTHO05D000662 1.0e-06 59.3 185 28.1
Prupe.6G284300 Prunus persica HOM05D000807 ORTHO05D000662 1.0e-06 59.3 531 21.1
BcaC01g00222 Brassica carinata HOM05D000807 ORTHO05D000662 1.3e-06 58.9 185 27.0
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 1.3e-06 58.9 185 27.0
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.3e-06 58.9 185 27.0
CSS0031924 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 1.3e-06 58.9 191 29.3
MD04G1165300 Malus domestica HOM05D000807 ORTHO05D000662 1.3e-06 58.9 525 21.7
Oeu021967.1 Olea europaea HOM05D000807 ORTHO05D000662 1.3e-06 58.9 208 28.8
RhsimUnG0142600 Rhododendron simsii HOM05D000807 ORTHO05D000662 1.3e-06 58.9 548 23.0
CSS0037231 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 1.7e-06 58.5 466 21.0
Cpa.g.sc5.231 Carica papaya HOM05D000807 ORTHO05D000662 1.7e-06 58.5 496 21.8
Manes.04G064900 Manihot esculenta HOM05D000807 ORTHO05D000662 1.7e-06 58.5 237 27.4
AagrBONN_evm.TU.Sc2ySwM_228.1532 Anthoceros agrestis HOM05D000807 ORTHO05D000662 2.3e-06 58.2 182 31.3
MD00G1083700 Malus domestica HOM05D000807 ORTHO05D000662 2.3e-06 58.2 159 32.7
Potri.004G183600 Populus trichocarpa HOM05D000807 ORTHO05D000662 2.3e-06 58.2 180 29.4
QL01p004738 Quercus lobata HOM05D000807 ORTHO05D000662 2.3e-06 58.2 175 30.9
Rhsim05G0048500 Rhododendron simsii HOM05D000807 ORTHO05D000662 2.3e-06 58.2 184 29.3
HPP92_025497 Vanilla planifolia HOM05D000807 ORTHO05D000662 2.3e-06 58.2 207 27.5
Aa31LG6G16800 Aethionema arabicum HOM05D000807 ORTHO05D000662 3.0e-06 57.8 171 27.5
BcaB02g11233 Brassica carinata HOM05D000807 ORTHO05D000662 3.0e-06 57.8 376 22.6
Carub.0007s0027 Capsella rubella HOM05D000807 ORTHO05D000662 3.0e-06 57.8 185 28.6
Duzib093G2239 Durio zibethinus HOM05D000807 ORTHO05D000662 3.0e-06 57.8 499 23.4
LjContig00081g0002219 Lotus japonicus HOM05D000807 ORTHO05D000662 3.0e-06 57.8 531 23.9
Nitab4.5_0004435g0020 Nicotiana tabacum HOM05D000807 ORTHO05D000662 3.0e-06 57.8 473 22.0
Peaxi162Scf00580g00420 Petunia axillaris HOM05D000807 ORTHO05D000662 3.0e-06 57.8 151 32.5
QL11p054527 Quercus lobata HOM05D000807 ORTHO05D000662 3.0e-06 57.8 192 27.6
COL.COLO4_17944 Corchorus olitorius HOM05D000807 ORTHO05D000662 3.9e-06 57.4 216 26.9
MBI08_g15761_MAGBIO Magnolia biondii HOM05D000807 ORTHO05D000662 3.9e-06 57.4 197 28.4
QL11p054234 Quercus lobata HOM05D000807 ORTHO05D000662 3.9e-06 57.4 192 27.6
SMO134G0190 Selaginella moellendorffii HOM05D000807 ORTHO05D000662 3.9e-06 57.4 215 28.8
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 3.9e-06 57.4 171 29.2
Aqoxy6G01731 Aquilegia oxysepala HOM05D000807 ORTHO05D000662 5.1e-06 57.0 184 28.8
MSTRG.19949 Avicennia marina HOM05D000807 ORTHO05D000662 5.1e-06 57.0 183 30.1
Eucgr.J02520 Eucalyptus grandis HOM05D000807 ORTHO05D000662 5.1e-06 57.0 185 29.2
Eucgr.L00936 Eucalyptus grandis HOM05D000807 ORTHO05D000662 5.1e-06 57.0 185 29.2
HPP92_025541 Vanilla planifolia HOM05D000807 ORTHO05D000662 5.1e-06 57.0 207 27.5
Duzib052G1112 Durio zibethinus HOM05D000807 ORTHO05D000662 6.6e-06 56.6 231 26.4
FAN27G0176 Fragaria x ananassa HOM05D000807 ORTHO05D000662 6.6e-06 56.6 242 28.1
Lalb_Chr10g0095301 Lupinus albus HOM05D000807 ORTHO05D000662 6.6e-06 56.6 217 27.6
Nitab4.5_0009371g0020 Nicotiana tabacum HOM05D000807 ORTHO05D000662 6.6e-06 56.6 519 21.6
VMungo0647G1123 Vigna mungo HOM05D000807 ORTHO05D000662 6.6e-06 56.6 194 29.4
CiPaw.09G214800 Carya illinoinensis HOM05D000807 ORTHO05D000662 8.6e-06 56.2 498 22.9
Haze_02047 Corylus avellana HOM05D000807 ORTHO05D000662 8.6e-06 56.2 159 30.8
Peaxi162Scf00004g02330 Petunia axillaris HOM05D000807 ORTHO05D000662 8.6e-06 56.2 389 22.4
Pp3c6_16130 Physcomitrium patens HOM05D000807 ORTHO05D000662 8.6e-06 56.2 190 26.3
Potri.005G102800 Populus trichocarpa HOM05D000807 ORTHO05D000662 8.6e-06 56.2 182 28.6
TPR.G18629 Trifolium pratense HOM05D000807 ORTHO05D000662 8.6e-06 56.2 528 23.7


User provided reference genes

Program Settings