Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 4.9e-231 804.3 462 100.0
CBR_g10795 Chara braunii HOM05D000019 ORTHO05D009492 1.9e-33 147.9 352 38.6
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.6e-32 144.8 417 32.9
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 4.9e-29 133.3 325 35.1
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 6.4e-29 132.9 322 36.3
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 8.3e-29 132.5 367 33.5
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.1e-28 132.1 357 30.3
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.4e-28 131.7 369 33.9
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.4e-28 131.0 397 33.5
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.2e-28 130.6 354 34.5
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 5.4e-28 129.8 300 37.7
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 9.2e-28 129.0 358 33.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.2e-27 128.6 285 35.8
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.6e-27 128.3 334 36.2
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.6e-27 128.3 352 34.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.7e-27 127.5 280 35.4
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.7e-27 127.5 352 34.9
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 3.5e-27 127.1 303 33.0
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.5e-27 127.1 351 32.8
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 4.6e-27 126.7 303 32.7
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.6e-27 126.7 251 38.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 6.0e-27 126.3 346 34.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 7.8e-27 125.9 339 33.3
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 7.8e-27 125.9 351 33.3
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.0e-26 125.6 303 32.3
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.0e-26 125.6 286 35.7
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.3e-26 125.2 299 37.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-26 124.8 354 33.9
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 2.3e-26 124.4 303 32.0
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 2.3e-26 124.4 361 28.5
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.3e-26 124.4 361 28.5
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.3e-26 124.4 351 32.5
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 2.3e-26 124.4 356 33.7
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 2.3e-26 124.4 326 34.0
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 5.1e-26 123.2 356 33.7
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 6.6e-26 122.9 358 32.1
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.6e-26 122.9 299 37.5
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.5e-25 121.7 378 28.6
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.5e-25 121.7 301 31.9
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.5e-25 121.7 319 30.4
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.5e-25 121.7 334 35.0
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.5e-25 121.7 300 34.3
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.9e-25 121.3 378 28.6
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.9e-25 121.3 392 31.9
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.9e-25 121.3 299 32.1
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 2.5e-25 120.9 319 31.0
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 2.5e-25 120.9 392 29.3
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 3.3e-25 120.6 358 29.6
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.3e-25 120.6 230 37.4
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 3.3e-25 120.6 340 34.4
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 5.6e-25 119.8 334 30.5
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 5.6e-25 119.8 312 33.7
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 7.3e-25 119.4 321 34.6
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 7.3e-25 119.4 309 34.0
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 7.3e-25 119.4 328 30.8
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 9.5e-25 119.0 230 39.1
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 9.5e-25 119.0 318 33.6
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 9.5e-25 119.0 394 28.4
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.2e-24 118.6 361 30.7
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.2e-24 118.6 431 30.4
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.2e-24 118.6 332 34.3
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.6e-24 118.2 404 31.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.6e-24 118.2 282 37.9
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.6e-24 118.2 332 33.1
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.1e-24 117.9 382 28.5
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.1e-24 117.9 318 34.9
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.1e-24 117.9 359 33.4
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.8e-24 117.5 339 35.4
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 2.8e-24 117.5 106 66.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.8e-24 117.5 414 30.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.8e-24 117.5 414 30.2
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.6e-24 117.1 408 27.9
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 4.7e-24 116.7 357 28.6
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.1e-23 115.5 355 32.7
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-23 115.5 354 28.2
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.8e-23 114.8 342 33.6
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.4e-23 114.4 296 36.5
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 2.4e-23 114.4 333 32.1
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.4e-23 114.4 415 30.8
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.4e-23 114.4 339 33.0
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 2.4e-23 114.4 280 33.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 3.1e-23 114.0 365 31.8
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 3.1e-23 114.0 320 33.4
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 4.0e-23 113.6 234 37.6
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.0e-23 113.6 320 34.1
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 5.2e-23 113.2 311 33.4
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 5.2e-23 113.2 417 30.0
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 5.2e-23 113.2 314 34.4
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 5.2e-23 113.2 395 32.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 6.8e-23 112.8 354 31.9
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 6.8e-23 112.8 344 31.7
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 6.8e-23 112.8 236 36.9
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 8.9e-23 112.5 277 36.1
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 8.9e-23 112.5 382 31.2
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 8.9e-23 112.5 310 34.5
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.2e-22 112.1 417 29.7
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.2e-22 112.1 296 34.8
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.2e-22 112.1 361 33.0
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.2e-22 112.1 394 28.2
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-22 112.1 282 33.0
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.5e-22 111.7 203 38.9
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.5e-22 111.7 408 32.6
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 2.0e-22 111.3 236 36.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-22 111.3 273 31.5
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.6e-22 110.9 270 37.4
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.6e-22 110.9 356 29.5
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.6e-22 110.9 361 32.7
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 3.4e-22 110.5 349 33.2
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 3.4e-22 110.5 350 32.0
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.4e-22 110.5 331 33.5
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 5.8e-22 109.8 313 32.3
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 5.8e-22 109.8 338 32.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 5.8e-22 109.8 343 31.8
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 5.8e-22 109.8 251 34.7
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 7.6e-22 109.4 301 33.9
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 7.6e-22 109.4 299 33.8
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 7.6e-22 109.4 324 34.6
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 7.6e-22 109.4 333 33.9
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 9.9e-22 109.0 349 32.7
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.3e-21 108.6 406 32.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.7e-21 108.2 217 38.7
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.2e-21 107.8 227 33.5
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.2e-21 107.8 316 33.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.2e-21 107.8 342 29.2
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 3.8e-21 107.1 274 33.2
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 6.4e-21 106.3 324 34.6
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 8.4e-21 105.9 301 32.9
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 8.4e-21 105.9 351 32.2
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.1e-20 105.5 353 32.9
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 2.4e-20 104.4 393 30.3
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 3.2e-20 104.0 331 32.0
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 5.4e-20 103.2 333 32.7
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 7.1e-20 102.8 322 33.9
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.2e-19 102.1 215 38.1
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.6e-19 101.7 201 34.8
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.1e-19 101.3 279 33.7
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.1e-19 101.3 277 31.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.7e-19 100.9 211 36.5
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 4.6e-19 100.1 320 30.9
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.1e-17 95.5 290 28.6
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.1e-17 95.5 270 30.7
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 5.6e-17 93.2 293 28.7
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 8.1e-16 89.4 258 32.6
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 8.1e-16 89.4 181 38.1
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 8.1e-16 89.4 298 28.9
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.6e-14 84.3 94 53.2
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.7e-13 81.6 261 29.1
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.7e-13 81.6 261 29.1
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.7e-13 81.6 324 27.2
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.7e-13 81.6 69 59.4
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.9e-13 80.1 264 29.9
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.1e-12 79.0 114 45.6
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.2e-12 77.0 337 26.4
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 1.2e-11 75.5 216 33.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 2.1e-11 74.7 239 31.8
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 6.0e-11 73.2 59 59.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.0e-10 72.4 256 28.5
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 4.3e-09 67.0 221 30.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.6e-08 65.1 119 39.5
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.6e-08 63.9 173 31.8
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 8.1e-08 62.8 93 45.2
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.1e-07 62.4 48 60.4
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 6.9e-07 59.7 100 41.0


User provided reference genes

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