Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 9.4e-271 936.4 521 100.0
CBR_g10797 Chara braunii HOM05D003929 ORTHO05D004499 5.0e-38 163.3 440 34.5
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.6e-15 88.6 107 45.8
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.0e-14 85.9 67 56.7
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.5e-13 81.3 72 52.8
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 5.5e-13 80.1 84 52.4
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 9.4e-13 79.3 69 52.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.2e-12 79.0 76 46.1
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.6e-12 78.6 64 57.8
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.7e-12 77.8 99 38.4
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 3.6e-12 77.4 66 56.1
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 4.7e-12 77.0 60 60.0
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 6.1e-12 76.6 62 58.1
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 8.0e-12 76.3 84 41.7
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 8.0e-12 76.3 104 37.5
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.0e-11 75.9 107 37.4
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.0e-11 75.9 75 49.3
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.4e-11 75.5 64 54.7
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.4e-11 75.5 94 39.4
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.4e-11 75.5 94 39.4
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.4e-11 75.5 64 54.7
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.4e-11 75.5 52 63.5
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.4e-11 75.5 63 54.0
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 1.8e-11 75.1 69 50.7
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 2.3e-11 74.7 50 62.0
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 3.0e-11 74.3 81 46.9
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.0e-11 74.3 67 52.2
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.0e-11 73.9 67 52.2
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 4.0e-11 73.9 94 43.6
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 4.0e-11 73.9 50 62.0
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 4.0e-11 73.9 75 52.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 5.2e-11 73.6 64 56.2
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.2e-11 73.6 110 40.0
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 5.2e-11 73.6 75 46.7
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 5.2e-11 73.6 94 38.3
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 5.2e-11 73.6 94 38.3
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 5.2e-11 73.6 94 38.3
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 5.2e-11 73.6 79 45.6
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 5.2e-11 73.6 79 45.6
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 6.8e-11 73.2 107 37.4
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 6.8e-11 73.2 111 34.2
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 6.8e-11 73.2 74 43.2
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 6.8e-11 73.2 64 56.2
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 6.8e-11 73.2 72 50.0
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 8.8e-11 72.8 84 40.5
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 8.8e-11 72.8 145 35.9
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 8.8e-11 72.8 66 53.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 8.8e-11 72.8 72 48.6
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 8.8e-11 72.8 96 38.5
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 8.8e-11 72.8 67 49.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.5e-10 72.0 62 53.2
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.0e-10 71.6 61 54.1
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 2.0e-10 71.6 73 49.3
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.0e-10 71.6 64 50.0
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-10 71.6 75 46.7
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 2.0e-10 71.6 66 53.0
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.6e-10 71.2 113 34.5
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 2.6e-10 71.2 67 50.7
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.6e-10 71.2 60 55.0
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.6e-10 71.2 152 30.3
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.6e-10 71.2 67 52.2
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.6e-10 71.2 60 53.3
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.4e-10 70.9 75 46.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 3.4e-10 70.9 60 50.0
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 3.4e-10 70.9 57 56.1
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 4.4e-10 70.5 109 34.9
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 4.4e-10 70.5 109 34.9
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 4.4e-10 70.5 109 34.9
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 4.4e-10 70.5 50 60.0
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 4.4e-10 70.5 66 51.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 7.5e-10 69.7 94 38.3
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 7.5e-10 69.7 109 34.9
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 7.5e-10 69.7 67 50.7
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 7.5e-10 69.7 50 60.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 9.8e-10 69.3 68 51.5
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 9.8e-10 69.3 54 57.4
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 9.8e-10 69.3 67 49.3
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.8e-10 69.3 67 49.3
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.8e-10 69.3 67 49.3
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.8e-10 69.3 67 49.3
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 9.8e-10 69.3 66 56.1
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.3e-09 68.9 71 47.9
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.3e-09 68.9 62 53.2
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.7e-09 68.6 64 54.7
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.7e-09 68.6 50 60.0
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 1.7e-09 68.6 71 47.9
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.7e-09 68.6 50 60.0
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.2e-09 68.2 68 50.0
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 2.2e-09 68.2 75 45.3
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.2e-09 68.2 67 50.7
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.2e-09 68.2 67 50.7
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.8e-09 67.8 125 31.2
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.8e-09 67.8 62 51.6
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 2.8e-09 67.8 50 58.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.7e-09 67.4 109 38.5
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.7e-09 67.4 49 57.1
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.7e-09 67.4 50 58.0
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.9e-09 67.0 66 47.0
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 4.9e-09 67.0 54 53.7
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 8.3e-09 66.2 88 46.6
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 8.3e-09 66.2 64 48.4
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.3e-09 66.2 64 48.4
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.1e-08 65.9 67 47.8
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.1e-08 65.9 52 55.8
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.4e-08 65.5 66 53.0
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 1.8e-08 65.1 67 46.3
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 4.1e-08 63.9 67 47.8
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.4e-08 63.5 63 49.2
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 9.2e-08 62.8 70 38.6
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 9.2e-08 62.8 64 46.9
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.2e-07 62.4 54 51.9
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 2.0e-07 61.6 173 29.5
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.0e-07 61.6 83 41.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 2.7e-07 61.2 63 50.8
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.7e-07 61.2 47 57.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 4.5e-07 60.5 60 53.3
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.3e-06 58.9 249 28.9
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.7e-06 58.5 134 29.9
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 3.8e-06 57.4 57 43.9
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 6.6e-06 56.6 247 25.9


User provided reference genes

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