Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 3.3e-281 971.1 496 100.0
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.3e-279 964.9 496 99.4
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.0e-222 775.8 472 86.0
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.7e-160 570.1 491 60.5
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 8.3e-160 567.8 494 59.1
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.2e-159 565.8 493 59.2
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.2e-159 565.8 494 59.1
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.6e-158 563.5 496 58.5
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 2.7e-158 562.8 496 58.3
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.5e-158 562.4 494 59.1
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.0e-157 560.8 496 58.1
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.3e-157 560.5 495 58.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.3e-157 559.7 496 57.9
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 3.9e-157 558.9 495 58.8
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-156 557.4 494 58.5
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.1e-156 557.4 494 59.1
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.1e-156 557.4 493 58.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.1e-156 557.4 495 58.4
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.1e-156 557.4 487 58.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.5e-156 556.2 494 58.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.5e-156 556.2 494 57.7
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.5e-156 556.2 494 57.9
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-156 555.8 494 58.1
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 4.3e-156 555.4 494 58.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 4.3e-156 555.4 493 57.6
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 9.5e-156 554.3 494 58.1
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 9.5e-156 554.3 494 58.1
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 9.5e-156 554.3 491 59.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 1.6e-155 553.5 494 57.9
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.1e-155 553.1 493 58.4
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.8e-155 552.7 493 56.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.8e-155 552.7 490 58.2
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.6e-155 552.4 494 58.1
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.6e-155 552.4 494 58.5
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 4.7e-155 552.0 494 58.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 4.7e-155 552.0 493 59.0
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.7e-155 552.0 492 58.1
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 4.7e-155 552.0 493 58.6
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.7e-155 552.0 491 57.8
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 8.1e-155 551.2 493 59.2
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.1e-154 550.8 493 57.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.4e-154 550.4 491 58.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.4e-154 550.4 494 57.7
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.8e-154 550.1 493 58.4
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.8e-154 550.1 493 56.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.3e-154 549.7 494 57.1
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.3e-154 549.7 496 57.9
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.1e-154 549.3 493 57.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.1e-154 549.3 497 57.7
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 4.0e-154 548.9 494 56.9
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 4.0e-154 548.9 493 56.6
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.0e-154 548.9 492 57.1
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.2e-154 548.5 495 56.6
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.8e-154 548.1 488 58.6
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 6.8e-154 548.1 494 58.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 6.8e-154 548.1 498 58.0
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 8.9e-154 547.7 494 57.5
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.9e-154 547.7 497 57.5
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.0e-153 546.6 490 57.3
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.0e-153 546.6 490 58.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.0e-153 546.6 493 58.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.6e-153 546.2 496 58.1
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.6e-153 546.2 494 57.5
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.4e-153 545.8 491 57.6
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.4e-153 545.8 491 58.0
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 3.4e-153 545.8 492 57.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 4.4e-153 545.4 493 57.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 7.6e-153 544.7 491 57.8
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 9.9e-153 544.3 493 59.0
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.9e-152 542.7 494 57.3
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 4.9e-152 542.0 490 58.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 4.9e-152 542.0 492 57.5
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 4.9e-152 542.0 492 57.1
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 6.4e-152 541.6 495 57.0
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 6.4e-152 541.6 493 57.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 8.4e-152 541.2 494 56.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.4e-151 539.7 505 56.2
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-151 539.7 493 57.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.2e-150 537.3 493 57.0
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.2e-150 537.3 490 56.9
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.2e-150 537.3 491 56.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.6e-150 537.0 493 57.0
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.5e-150 535.8 493 57.8
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 7.8e-150 534.6 494 57.1
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 7.8e-150 534.6 493 56.2
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.0e-149 534.3 497 56.7
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.3e-149 533.9 490 56.1
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.7e-149 533.5 490 56.5
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.7e-149 533.5 505 55.6
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.7e-149 533.5 514 55.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.0e-149 532.7 491 55.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.5e-148 530.4 487 56.9
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 3.3e-148 529.3 491 56.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 4.3e-148 528.9 472 58.1
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.6e-148 528.5 493 55.8
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 5.6e-148 528.5 493 55.8
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 9.6e-148 527.7 491 56.0
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.2e-147 527.3 494 55.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 2.1e-147 526.6 493 55.6
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 4.7e-147 525.4 493 55.2
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.7e-147 525.4 493 55.6
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.7e-147 525.4 493 55.6
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 8.1e-147 524.6 493 56.0
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.1e-146 524.2 492 54.9
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.5e-145 520.4 489 55.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 4.4e-145 518.8 530 53.0
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 9.9e-145 517.7 462 58.4
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 9.9e-145 517.7 486 55.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.9e-144 516.2 491 56.0
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.7e-142 509.6 509 53.6
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 4.6e-142 508.8 493 55.0
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 9.6e-140 501.1 492 53.0
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 5.3e-138 495.4 491 54.4
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 7.6e-137 491.5 473 55.4
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 8.4e-136 488.0 461 54.2
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.4e-135 487.3 493 52.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.9e-135 486.9 525 51.4
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 4.2e-135 485.7 472 55.3
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 7.9e-134 481.5 494 52.8
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.0e-133 481.1 571 47.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.8e-133 480.3 494 51.4
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 6.7e-133 478.4 430 60.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 8.7e-133 478.0 473 52.6
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 4.3e-132 475.7 519 49.9
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.3e-130 468.8 428 57.5
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.6e-129 466.5 494 50.0
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 5.1e-125 452.2 493 50.3
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.6e-124 448.7 494 50.6
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.7e-120 437.2 429 53.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.5e-119 433.3 499 49.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 8.2e-115 418.3 414 54.8
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.9e-114 415.2 432 52.8
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.7e-112 410.6 393 56.7
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.8e-109 400.6 427 53.9
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 8.5e-104 381.7 578 40.7
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.9e-102 375.2 348 56.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 6.7e-101 372.1 359 54.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-100 371.3 368 53.3
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 5.2e-93 345.9 345 54.2
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.7e-89 332.0 315 55.9
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.7e-89 332.0 453 45.3
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 6.1e-86 322.4 308 55.5
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.8e-82 310.8 307 53.4
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.0e-80 302.8 307 53.4
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-77 294.7 376 43.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 6.3e-75 285.8 505 35.8
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.5e-68 264.6 206 73.3
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.0e-65 254.2 266 52.3
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.4e-60 236.9 182 63.7
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-58 230.7 206 59.7
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 9.5e-55 218.8 229 52.4
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 7.5e-52 209.1 233 51.5
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-50 204.5 159 61.6
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 2.4e-42 177.6 135 66.7
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 4.3e-39 166.8 152 59.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 2.1e-38 164.5 135 62.2
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 6.8e-37 159.5 134 61.2
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.5e-36 158.3 113 65.5
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 3.0e-32 144.1 293 34.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-31 142.1 266 37.2
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.6e-31 139.0 113 60.2
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.8e-29 134.8 276 36.2
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.0e-28 131.3 98 61.2
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.2e-27 127.9 170 43.5
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.2e-17 95.5 59 66.1
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.2e-17 95.5 59 66.1
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 4.6e-17 93.6 99 51.5
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.3e-16 92.0 65 72.3
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.7e-16 89.7 65 66.2
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.5e-15 87.8 69 62.3
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 3.3e-15 87.4 67 64.2
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 3.3e-15 87.4 60 70.0
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.6e-15 86.7 65 63.1
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.3e-14 85.5 65 63.1
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.0e-13 80.5 61 63.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 9.0e-13 79.3 63 65.1
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.4e-12 77.4 77 53.2
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 7.1e-10 69.7 53 64.2
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.0e-08 65.9 38 76.3
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 3.9e-08 63.9 39 61.5


User provided reference genes

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