Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 1.5e-50 202.6 106 100.0
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 3.8e-09 65.1 60 51.7
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 3.2e-08 62.0 57 52.6
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.1e-08 61.6 75 48.0
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 4.1e-08 61.6 63 47.6
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.1e-08 61.6 48 62.5
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 7.1e-08 60.8 70 50.0
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 7.1e-08 60.8 51 58.8
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 7.1e-08 60.8 49 61.2
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 7.1e-08 60.8 49 61.2
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.2e-07 60.1 64 50.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.2e-07 60.1 49 61.2
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.2e-07 60.1 49 61.2
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.6e-07 59.7 93 38.7
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.6e-07 59.7 61 52.5
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.1e-07 59.3 62 46.8
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.1e-07 59.3 58 53.4
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 2.1e-07 59.3 49 59.2
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 2.1e-07 59.3 46 65.2
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 2.1e-07 59.3 48 58.3
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.1e-07 59.3 61 52.5
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 2.7e-07 58.9 49 59.2
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 2.7e-07 58.9 55 52.7
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 3.5e-07 58.5 71 45.1
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 3.5e-07 58.5 57 52.6
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 3.5e-07 58.5 57 52.6
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 3.5e-07 58.5 46 63.0
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.5e-07 58.5 77 46.8
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 3.5e-07 58.5 46 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 4.6e-07 58.2 64 48.4
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 4.6e-07 58.2 49 59.2
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 4.6e-07 58.2 57 52.6
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 4.6e-07 58.2 62 50.0
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 4.6e-07 58.2 75 49.3
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.6e-07 58.2 46 63.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 6.0e-07 57.8 49 59.2
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 6.0e-07 57.8 61 50.8
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 6.0e-07 57.8 71 47.9
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.0e-07 57.8 59 49.2
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.0e-07 57.8 46 63.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.0e-07 57.8 46 63.0
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 6.0e-07 57.8 49 59.2
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 6.0e-07 57.8 60 50.0
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 7.8e-07 57.4 57 50.9
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 7.8e-07 57.4 57 50.9
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 7.8e-07 57.4 57 50.9
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 7.8e-07 57.4 57 50.9
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 7.8e-07 57.4 49 55.1
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 7.8e-07 57.4 46 63.0
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 7.8e-07 57.4 86 43.0
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.0e-06 57.0 48 58.3
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.0e-06 57.0 46 58.7
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.0e-06 57.0 96 38.5
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.3e-06 56.6 91 41.8
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.3e-06 56.6 60 50.0
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.3e-06 56.6 82 45.1
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.7e-06 56.2 55 50.9
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.7e-06 56.2 46 58.7
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.7e-06 56.2 58 50.0
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.7e-06 56.2 47 59.6
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 2.3e-06 55.8 62 50.0
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 2.3e-06 55.8 46 60.9
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.0e-06 55.5 46 58.7
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 3.0e-06 55.5 60 46.7
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.0e-06 55.5 46 58.7
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 3.9e-06 55.1 44 61.4
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 3.9e-06 55.1 82 37.8
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.9e-06 55.1 46 60.9
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 5.1e-06 54.7 59 45.8
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 5.1e-06 54.7 46 58.7
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 5.1e-06 54.7 46 56.5
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 5.1e-06 54.7 46 58.7
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 6.6e-06 54.3 59 45.8
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 6.6e-06 54.3 54 50.0
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 6.6e-06 54.3 60 43.3
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 8.6e-06 53.9 57 47.4
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 8.6e-06 53.9 57 47.4
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 8.6e-06 53.9 57 47.4
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 8.6e-06 53.9 46 56.5
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 8.6e-06 53.9 46 56.5


User provided reference genes

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