Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 3.5e-200 701.4 364 100.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.3e-98 363.2 357 52.4
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 3.1e-95 352.8 353 49.9
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.1e-95 352.8 353 48.7
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.9e-95 351.7 353 49.0
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.6e-94 349.7 360 48.3
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.0e-93 347.8 362 48.9
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.3e-93 347.4 353 47.9
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 2.9e-93 346.3 354 47.7
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.9e-93 345.5 353 47.9
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 6.4e-93 345.1 353 48.4
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.9e-92 343.6 354 47.5
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.2e-92 342.8 354 47.5
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 4.2e-92 342.4 358 48.6
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 9.3e-92 341.3 353 47.6
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.2e-91 340.9 358 47.5
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.6e-91 340.5 353 47.0
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 2.1e-91 340.1 362 48.6
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.7e-91 339.7 356 47.8
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 4.6e-91 339.0 354 48.3
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.0e-90 337.8 362 46.4
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.8e-90 337.0 354 46.9
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.3e-90 336.7 354 47.7
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.0e-90 336.3 353 47.6
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.9e-90 335.9 353 47.0
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 3.9e-90 335.9 353 46.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.1e-90 335.5 353 46.5
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 5.1e-90 335.5 354 47.2
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 5.1e-90 335.5 353 47.6
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 6.7e-90 335.1 353 47.6
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 8.7e-90 334.7 353 46.7
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.1e-89 334.3 353 47.3
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.5e-89 333.2 354 46.3
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 5.7e-89 332.0 360 46.4
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.7e-89 332.0 356 47.2
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 5.7e-89 332.0 353 46.5
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.7e-89 332.0 353 47.3
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.3e-88 330.9 354 48.3
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.1e-88 330.1 360 47.5
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.1e-88 330.1 356 47.5
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.8e-88 329.7 354 47.7
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.7e-88 329.3 364 48.1
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 8.2e-88 328.2 354 47.7
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.4e-87 327.4 353 47.9
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.4e-87 327.4 353 47.0
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.4e-87 327.4 355 46.8
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.4e-87 326.6 354 47.5
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.1e-87 326.2 345 49.6
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 3.1e-87 326.2 354 46.6
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.0e-87 325.9 361 44.0
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 5.3e-87 325.5 354 46.6
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.3e-87 325.5 361 44.0
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 6.9e-87 325.1 354 47.5
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 6.9e-87 325.1 354 47.5
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 6.9e-87 325.1 355 47.6
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.2e-86 324.3 354 45.8
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.0e-86 323.6 354 47.2
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-86 323.6 354 47.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.0e-86 323.6 356 46.6
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 2.6e-86 323.2 354 46.9
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.6e-86 323.2 354 47.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 3.4e-86 322.8 353 45.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.4e-86 322.8 354 47.2
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 3.4e-86 322.8 353 45.3
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 3.4e-86 322.8 354 46.6
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 4.5e-86 322.4 359 45.7
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.5e-86 322.4 353 46.2
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 4.5e-86 322.4 349 46.7
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 4.5e-86 322.4 353 47.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.8e-86 322.0 357 45.9
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 7.6e-86 321.6 354 46.6
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.0e-85 321.2 355 46.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.3e-85 320.9 354 44.6
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.7e-85 320.5 353 43.3
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 2.2e-85 320.1 355 46.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.9e-85 319.7 353 45.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 2.9e-85 319.7 354 46.6
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 3.8e-85 319.3 369 45.5
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 3.8e-85 319.3 362 44.8
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 3.8e-85 319.3 356 45.8
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 4.9e-85 318.9 353 45.9
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 6.5e-85 318.5 356 45.8
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 6.5e-85 318.5 354 46.0
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.5e-85 318.5 357 45.4
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 8.4e-85 318.2 355 45.4
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 8.4e-85 318.2 356 45.8
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 8.4e-85 318.2 355 45.9
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-84 317.8 356 45.5
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.9e-84 317.0 355 45.9
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.9e-84 317.0 353 46.7
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.9e-84 317.0 356 47.5
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.5e-84 316.6 357 45.7
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 4.2e-84 315.8 353 43.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 4.2e-84 315.8 358 45.3
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 7.1e-84 315.1 260 58.8
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 7.1e-84 315.1 354 44.9
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 9.3e-84 314.7 354 45.8
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.2e-83 314.3 352 45.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.6e-83 313.9 354 44.6
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.1e-83 313.5 356 45.2
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.1e-83 313.5 354 46.0
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 2.7e-83 313.2 366 44.5
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 3.5e-83 312.8 405 41.2
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.5e-83 312.8 356 43.8
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 4.6e-83 312.4 356 43.8
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 4.6e-83 312.4 355 45.6
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 6.1e-83 312.0 353 45.9
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 6.1e-83 312.0 354 45.8
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 7.9e-83 311.6 354 44.9
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.0e-82 311.2 331 49.5
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.3e-82 310.8 353 45.0
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 3.9e-82 309.3 355 43.7
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 6.7e-82 308.5 407 42.5
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 6.7e-82 308.5 354 43.2
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 3.3e-81 306.2 355 44.8
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.3e-80 304.3 376 42.3
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.1e-79 301.2 327 45.3
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.1e-79 299.3 356 46.3
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 9.0e-79 298.1 353 43.1
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-77 294.7 353 43.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 2.2e-77 293.5 373 41.6
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.8e-77 292.7 418 40.4
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 8.5e-77 291.6 427 38.9
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.2e-76 289.7 342 44.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.9e-75 285.0 353 43.3
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.0e-74 284.6 353 44.2
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.3e-74 283.5 382 40.8
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 2.3e-74 283.5 331 45.6
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.8e-74 281.6 361 40.4
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.5e-73 280.0 353 41.6
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.3e-73 279.6 357 41.7
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 5.7e-73 278.9 373 39.9
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 9.7e-73 278.1 354 42.7
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.5e-65 254.2 353 37.1
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.5e-65 254.2 258 48.8
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 3.5e-62 243.0 243 50.2
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.0e-61 239.2 229 48.5
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.0e-58 231.5 277 43.0
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 4.4e-57 226.1 330 38.8
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.9e-54 215.7 180 56.1
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 3.8e-53 213.0 198 54.0
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.6e-49 200.3 196 50.5
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 5.9e-46 189.1 165 56.4
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 8.5e-45 185.3 246 39.8
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 9.4e-44 181.8 185 50.8
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.7e-38 163.7 145 52.4
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 2.1e-35 154.1 151 49.0
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.7e-35 152.9 172 45.3
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 6.3e-32 142.5 147 50.3
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.6e-30 137.9 178 41.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.8e-26 124.4 111 51.4
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.4e-23 114.0 125 45.6
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.0e-22 110.9 142 42.3
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.5e-20 104.8 105 53.3
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 2.5e-20 104.0 95 52.6
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 4.7e-19 99.8 100 49.0
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 6.0e-14 82.8 111 37.8
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 6.0e-14 82.8 69 52.2
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.0e-13 82.0 53 66.0
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 5.1e-13 79.7 67 50.7
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-12 78.6 69 46.4
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 6.2e-11 72.8 61 50.8
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.1e-10 72.0 118 37.3
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 6.8e-10 69.3 69 50.7
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.1e-07 62.0 123 35.0
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 2.4e-07 60.8 43 65.1


User provided reference genes

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