Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 2.8e-236 821.6 431 100.0
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 2.7e-114 416.4 338 67.2
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 3.0e-113 412.9 369 62.3
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.2e-109 401.0 364 60.7
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.6e-109 399.8 334 62.3
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.6e-109 399.8 371 60.1
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 3.4e-109 399.4 348 61.5
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 3.4e-109 399.4 348 61.5
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 9.9e-109 397.9 333 62.8
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.3e-108 397.5 334 62.0
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.7e-108 397.1 334 62.0
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.7e-108 397.1 334 62.9
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.2e-108 396.7 340 62.4
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.2e-108 396.7 333 62.8
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 2.9e-108 396.4 334 62.9
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 4.9e-108 395.6 346 60.7
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 4.9e-108 395.6 333 61.3
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 6.4e-108 395.2 334 62.0
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 6.4e-108 395.2 334 62.0
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 6.4e-108 395.2 345 60.9
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 6.4e-108 395.2 334 62.0
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 8.4e-108 394.8 334 62.6
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 8.4e-108 394.8 367 58.6
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.4e-107 394.0 346 60.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 1.9e-107 393.7 334 61.4
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.9e-107 393.7 368 59.5
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 2.4e-107 393.3 354 60.2
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 2.4e-107 393.3 335 62.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 2.4e-107 393.3 345 61.4
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 2.4e-107 393.3 350 60.6
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.4e-107 393.3 345 60.9
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 2.4e-107 393.3 333 61.9
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 3.2e-107 392.9 344 60.2
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 3.2e-107 392.9 403 55.1
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 3.2e-107 392.9 372 58.1
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 3.2e-107 392.9 334 61.4
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.2e-107 392.9 333 61.9
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 4.2e-107 392.5 335 62.1
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 4.2e-107 392.5 334 61.4
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 4.2e-107 392.5 334 61.7
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.2e-107 392.5 373 57.6
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 5.4e-107 392.1 334 61.7
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 5.4e-107 392.1 344 60.5
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 5.4e-107 392.1 329 62.3
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 5.4e-107 392.1 353 60.1
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 5.4e-107 392.1 333 61.6
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 7.1e-107 391.7 335 62.1
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 7.1e-107 391.7 334 61.1
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.2e-106 391.0 373 57.4
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.2e-106 391.0 345 61.2
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.6e-106 390.6 375 57.6
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.6e-106 390.6 334 61.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-106 390.6 335 61.8
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.6e-106 390.6 335 61.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.6e-106 390.6 349 61.0
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.6e-106 390.6 372 57.3
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.6e-106 390.6 325 63.7
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 2.1e-106 390.2 335 62.4
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 2.1e-106 390.2 366 57.7
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 2.1e-106 390.2 366 57.7
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 3.5e-106 389.4 349 59.9
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.5e-106 389.4 333 61.9
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.6e-106 389.0 334 60.5
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 4.6e-106 389.0 334 61.4
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 4.6e-106 389.0 327 63.3
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 6.0e-106 388.7 362 58.6
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 6.0e-106 388.7 355 58.3
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 7.9e-106 388.3 350 60.0
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 7.9e-106 388.3 334 61.1
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 7.9e-106 388.3 342 60.5
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.9e-106 388.3 333 61.6
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 7.9e-106 388.3 333 61.0
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 7.9e-106 388.3 335 61.8
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 7.9e-106 388.3 366 57.1
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.0e-105 387.9 373 56.6
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.0e-105 387.9 335 62.4
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.3e-105 387.5 355 58.0
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.8e-105 387.1 334 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 2.3e-105 386.7 314 65.0
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.3e-105 386.7 358 58.9
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 5.1e-105 385.6 328 61.0
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 5.1e-105 385.6 331 60.1
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 5.1e-105 385.6 343 61.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 6.7e-105 385.2 327 63.3
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 6.7e-105 385.2 360 58.6
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 6.7e-105 385.2 364 58.2
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.1e-104 384.4 334 61.1
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.1e-104 384.4 334 60.5
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.1e-104 384.4 334 62.0
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 1.5e-104 384.0 334 60.5
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.5e-104 384.0 340 59.7
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 3.3e-104 382.9 352 59.9
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 4.3e-104 382.5 324 62.0
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 5.6e-104 382.1 334 60.5
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 9.6e-104 381.3 343 60.6
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 9.6e-104 381.3 355 59.2
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.3e-103 380.9 343 60.6
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 2.1e-103 380.2 333 59.5
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 3.7e-103 379.4 365 55.9
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 6.2e-103 378.6 325 62.2
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 6.2e-103 378.6 326 61.7
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-102 377.5 378 55.0
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-102 377.5 378 55.0
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.1e-102 376.3 378 55.0
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.0e-102 375.9 378 54.8
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 4.0e-102 375.9 334 59.6
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.3e-102 375.6 378 54.8
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 3.4e-101 372.9 334 57.8
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 4.5e-101 372.5 314 63.4
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.0e-100 371.3 334 59.0
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.1e-99 367.9 334 59.3
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.9e-99 367.1 314 62.7
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 2.1e-98 363.6 303 63.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 6.0e-98 362.1 303 63.4
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.3e-97 360.9 333 60.1
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.9e-96 357.1 303 63.0
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.3e-95 354.4 320 58.8
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 2.8e-95 353.2 334 57.2
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.1e-94 349.7 303 61.4
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 9.0e-94 348.2 358 53.6
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.6e-93 346.7 333 57.1
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.6e-90 337.4 321 58.6
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.0e-89 334.7 296 60.5
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 6.7e-89 332.0 311 57.6
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 6.3e-87 325.5 284 60.6
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 6.9e-86 322.0 285 59.6
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 9.0e-86 321.6 346 53.8
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 7.7e-85 318.5 370 51.1
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 3.2e-83 313.2 272 62.5
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.1e-78 296.2 252 63.9
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 5.9e-69 265.8 354 48.6
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.0e-68 265.0 290 53.1
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.8e-62 244.2 204 63.7
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 8.0e-58 228.8 313 44.1
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 2.4e-54 217.2 199 58.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 2.4e-54 217.2 199 58.8
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.6e-53 214.5 315 42.5
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.2e-48 198.4 333 39.3
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.4e-48 196.8 315 40.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.6e-42 177.9 172 55.8
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.9e-39 167.2 129 64.3
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 9.2e-30 135.6 160 50.6
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.9e-22 111.3 197 38.6
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.6e-21 108.2 155 41.9
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 4.6e-21 106.7 80 66.2
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.9e-20 103.6 240 35.4
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 3.3e-19 100.5 217 37.3
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.2e-18 98.6 74 60.8
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.8e-17 94.7 72 59.7
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 4.0e-09 67.0 72 51.4
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 7.6e-08 62.8 47 63.8


User provided reference genes

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