Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 4.1e-122 441.4 223 100.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 8.0e-70 267.7 219 61.2
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 2.0e-68 263.1 218 60.1
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.4e-68 262.3 211 61.1
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.2e-66 255.8 211 61.1
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.0e-65 253.1 213 60.1
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.7e-56 223.4 211 53.6
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.3e-56 223.0 208 55.3
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 4.3e-55 218.8 211 54.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 4.3e-55 218.8 211 56.4
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 5.6e-55 218.4 211 56.4
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.6e-55 218.4 211 51.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.3e-55 218.0 211 50.7
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 9.5e-55 217.6 211 53.6
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.2e-54 217.2 211 50.7
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 1.2e-54 217.2 211 54.0
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-54 216.5 216 54.2
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-54 216.5 216 54.2
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 3.6e-54 215.7 211 51.2
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 4.7e-54 215.3 211 52.6
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 4.7e-54 215.3 211 54.0
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 4.7e-54 215.3 211 54.0
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 6.2e-54 214.9 208 52.9
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 6.2e-54 214.9 211 53.6
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.1e-53 214.2 213 53.5
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.4e-53 213.8 211 50.7
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.8e-53 213.4 215 51.2
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.8e-53 213.4 211 52.1
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.3e-53 213.0 211 51.7
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 2.3e-53 213.0 211 51.2
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.3e-53 213.0 213 50.7
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.3e-53 213.0 211 50.2
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.1e-53 212.6 213 53.1
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.0e-53 212.2 211 51.7
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 4.0e-53 212.2 213 51.6
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 4.0e-53 212.2 213 52.6
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 4.0e-53 212.2 208 51.4
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 5.2e-53 211.8 211 52.1
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 5.2e-53 211.8 211 52.1
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 5.2e-53 211.8 211 49.8
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 8.9e-53 211.1 211 50.7
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 8.9e-53 211.1 211 53.1
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 8.9e-53 211.1 216 50.5
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.2e-52 210.7 211 51.7
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.5e-52 210.3 211 50.7
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.5e-52 210.3 213 54.5
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.0e-52 209.9 213 51.6
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.0e-52 209.9 211 49.8
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.6e-52 209.5 211 51.2
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.4e-52 209.1 216 50.0
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 3.4e-52 209.1 216 50.5
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 3.4e-52 209.1 211 50.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 4.4e-52 208.8 211 50.2
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 4.4e-52 208.8 211 49.8
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 4.4e-52 208.8 208 51.4
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 4.4e-52 208.8 211 49.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 5.8e-52 208.4 211 49.3
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 5.8e-52 208.4 211 49.8
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 5.8e-52 208.4 214 51.9
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 5.8e-52 208.4 216 51.4
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 5.8e-52 208.4 211 51.2
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 7.5e-52 208.0 213 50.7
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 7.5e-52 208.0 211 51.2
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 7.5e-52 208.0 211 51.2
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 7.5e-52 208.0 209 52.2
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 7.5e-52 208.0 216 52.8
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 9.8e-52 207.6 215 49.8
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 9.8e-52 207.6 216 51.4
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.3e-51 207.2 216 51.9
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.7e-51 206.8 216 51.9
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 2.2e-51 206.5 216 51.9
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.2e-51 206.5 213 50.7
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.9e-51 206.1 211 49.8
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 3.7e-51 205.7 210 52.4
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 4.9e-51 205.3 216 50.9
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 6.4e-51 204.9 212 50.0
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 8.3e-51 204.5 211 51.2
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.1e-50 204.1 211 49.3
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.4e-50 203.8 211 50.7
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.4e-50 203.8 218 51.4
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.4e-50 203.8 211 50.2
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.9e-50 203.4 225 48.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.9e-50 203.4 215 50.2
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-50 203.0 211 50.7
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.4e-50 203.0 218 51.4
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 4.1e-50 202.2 215 49.8
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 5.4e-50 201.8 215 49.3
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.4e-50 201.8 211 50.7
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.4e-50 201.8 211 50.2
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 5.4e-50 201.8 216 50.9
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.1e-50 201.4 211 50.2
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 7.1e-50 201.4 215 49.8
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 7.1e-50 201.4 215 49.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 7.1e-50 201.4 211 50.2
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 7.1e-50 201.4 215 49.8
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 7.1e-50 201.4 211 50.2
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 7.1e-50 201.4 211 49.3
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 9.2e-50 201.1 211 49.8
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-49 200.7 215 49.8
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-49 200.7 215 49.3
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-49 200.7 211 49.8
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.2e-49 200.7 211 48.8
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.6e-49 200.3 216 50.5
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.6e-49 200.3 211 49.3
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.1e-49 199.9 215 49.3
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 2.7e-49 199.5 215 48.8
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.7e-49 199.5 208 53.4
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.5e-49 199.1 209 51.2
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 7.8e-49 198.0 211 49.3
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 7.8e-49 198.0 200 52.5
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 7.8e-49 198.0 207 52.2
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.7e-48 196.8 198 50.0
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.3e-48 196.4 202 51.0
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 6.6e-48 194.9 213 47.9
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 6.6e-48 194.9 202 52.0
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.5e-47 193.7 196 52.0
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.9e-47 193.4 209 52.2
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.5e-47 193.0 199 53.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 7.3e-47 191.4 197 52.8
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 2.1e-46 189.9 197 50.3
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 3.6e-46 189.1 208 49.0
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 4.7e-46 188.7 211 46.9
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 6.2e-46 188.3 198 51.0
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 8.1e-46 188.0 201 48.3
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.1e-45 186.0 211 48.8
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 3.1e-45 186.0 211 48.8
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 4.0e-45 185.7 203 48.3
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 5.2e-45 185.3 199 50.3
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.9e-45 184.5 211 46.4
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.2e-44 184.1 220 46.4
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.4e-44 182.6 215 48.8
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.4e-44 182.2 211 46.0
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 4.4e-44 182.2 233 44.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 2.9e-43 179.5 218 44.5
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 6.4e-43 178.3 202 49.5
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-42 177.2 246 42.3
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 9.2e-42 174.5 188 51.1
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.1e-41 173.3 211 49.8
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 2.1e-41 173.3 229 43.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 3.5e-41 172.6 236 41.1
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.0e-40 171.0 211 45.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.1e-39 167.5 214 43.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 2.5e-39 166.4 191 48.7
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.3e-39 166.0 178 51.1
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.1e-38 161.4 208 45.7
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.2e-36 157.5 205 44.4
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 9.9e-36 154.5 213 43.2
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.3e-35 154.1 228 41.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.4e-34 150.6 213 41.8
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.9e-34 150.2 182 48.4
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 3.5e-33 146.0 160 49.4
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 4.6e-33 145.6 156 48.7
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.3e-32 144.1 141 54.6
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.1e-31 141.0 168 47.6
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 8.1e-30 134.8 200 38.5
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.0e-29 132.5 217 38.2
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.5e-28 130.6 150 48.7
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.0e-25 118.6 156 43.6
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 2.8e-22 109.8 119 52.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.1e-21 107.8 155 38.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 2.4e-21 106.7 111 55.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.2e-20 104.4 221 35.3
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.1e-17 93.6 94 55.3
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.5e-17 92.8 113 43.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 3.5e-17 92.8 204 34.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.5e-15 87.4 106 41.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-13 79.3 106 47.2
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-10 70.9 111 37.8
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 3.2e-10 69.7 64 46.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.6e-09 67.4 79 49.4
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 4.6e-09 65.9 68 48.5


User provided reference genes

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