Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 6.5e-169 597.4 328 100.0
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 8.2e-47 191.8 186 60.8
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 7.0e-46 188.7 183 52.5
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.2e-45 188.0 184 51.1
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.2e-45 188.0 185 57.3
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.0e-45 187.2 186 55.4
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.5e-45 186.4 184 50.5
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 3.5e-45 186.4 184 50.5
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 3.5e-45 186.4 187 56.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.5e-45 186.4 182 51.1
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.9e-45 185.7 183 57.9
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.3e-44 184.5 183 59.6
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.7e-44 184.1 181 51.9
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.7e-44 184.1 186 56.5
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.7e-44 184.1 182 50.5
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.2e-44 183.7 200 50.0
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 2.2e-44 183.7 182 50.5
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.9e-44 183.3 186 58.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 2.9e-44 183.3 186 56.5
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.9e-44 183.3 183 50.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.8e-44 183.0 181 51.4
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 3.8e-44 183.0 186 55.9
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 3.8e-44 183.0 188 56.9
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 3.8e-44 183.0 188 48.9
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 3.8e-44 183.0 183 50.8
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 3.8e-44 183.0 183 50.8
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 5.0e-44 182.6 185 54.6
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 6.5e-44 182.2 186 49.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 6.5e-44 182.2 182 50.5
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 8.5e-44 181.8 183 51.4
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.1e-43 181.4 181 57.5
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.1e-43 181.4 181 57.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.1e-43 181.4 193 54.4
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.1e-43 181.4 184 57.6
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.5e-43 181.0 183 56.8
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.5e-43 181.0 186 54.3
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.5e-43 181.0 188 57.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.9e-43 180.6 185 57.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 2.5e-43 180.3 185 55.1
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.5e-43 180.3 183 52.5
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 3.2e-43 179.9 185 50.8
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.2e-43 179.9 187 50.8
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 4.2e-43 179.5 188 56.4
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 5.5e-43 179.1 184 52.7
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 7.2e-43 178.7 184 50.0
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.4e-43 178.3 184 50.0
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 9.4e-43 178.3 185 49.2
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.2e-42 177.9 186 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.6e-42 177.6 196 54.6
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.6e-42 177.6 188 47.9
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 2.1e-42 177.2 183 48.6
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.1e-42 177.2 188 56.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.7e-42 176.8 184 52.2
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 3.6e-42 176.4 187 50.3
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 3.6e-42 176.4 183 56.3
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 3.6e-42 176.4 182 57.7
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 3.6e-42 176.4 188 52.1
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 4.7e-42 176.0 180 50.0
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 4.7e-42 176.0 184 52.7
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.7e-42 176.0 180 58.3
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 6.1e-42 175.6 184 48.4
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 6.1e-42 175.6 184 47.8
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 8.0e-42 175.3 184 46.7
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 8.0e-42 175.3 182 49.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.0e-41 174.9 184 47.8
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.0e-41 174.9 184 53.3
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.4e-41 174.5 184 52.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.4e-41 174.5 191 48.2
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.4e-41 174.5 181 58.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 2.3e-41 173.7 184 52.7
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 2.3e-41 173.7 184 52.7
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.3e-41 173.7 184 52.7
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.3e-41 173.7 182 49.5
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.3e-41 173.7 180 49.4
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.0e-41 173.3 184 52.7
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 4.0e-41 172.9 189 52.9
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 4.0e-41 172.9 182 57.1
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 4.0e-41 172.9 186 46.2
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 4.0e-41 172.9 182 47.8
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 5.2e-41 172.6 184 48.9
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 5.2e-41 172.6 192 51.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 5.2e-41 172.6 189 53.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 6.7e-41 172.2 180 55.6
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.2e-40 171.4 183 52.5
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 1.5e-40 171.0 184 52.2
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.0e-40 170.6 182 50.0
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 2.0e-40 170.6 182 52.7
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 2.0e-40 170.6 182 52.7
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.0e-40 170.6 182 50.0
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 2.0e-40 170.6 182 52.7
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.6e-40 170.2 182 46.7
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 2.6e-40 170.2 201 51.2
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.3e-40 169.9 155 53.5
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 4.4e-40 169.5 180 53.9
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 5.7e-40 169.1 184 47.8
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 9.7e-40 168.3 157 52.9
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.3e-39 167.9 180 56.7
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.2e-39 167.2 194 52.6
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 2.8e-39 166.8 180 54.4
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 4.8e-39 166.0 180 55.6
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.4e-38 163.7 184 45.1
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.6e-37 161.0 198 48.5
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 7.7e-37 158.7 185 50.8
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.2e-36 157.1 193 50.3
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.2e-36 157.1 181 52.5
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 8.0e-34 148.7 140 52.9
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.5e-32 144.4 181 50.3
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 9.8e-32 141.7 122 55.7
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 4.2e-27 126.3 137 47.4
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 2.1e-26 124.0 135 45.9
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.0e-25 121.7 104 58.7
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.4e-25 121.3 149 44.3
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.4e-25 121.3 137 45.3
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.2e-25 119.4 149 43.6
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 5.2e-25 119.4 149 43.6
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 8.8e-25 118.6 141 40.4
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.2e-24 118.2 162 40.7
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.5e-24 117.9 148 40.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 3.4e-24 116.7 160 41.2
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 4.4e-24 116.3 150 41.3
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 4.4e-24 116.3 150 41.3
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 4.4e-24 116.3 150 41.3
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 5.7e-24 115.9 150 41.3
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 5.7e-24 115.9 150 41.3
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 9.8e-24 115.2 162 39.5
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 2.2e-23 114.0 150 41.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.8e-23 113.6 149 40.3
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 6.3e-23 112.5 150 40.7
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 4.5e-21 106.3 174 35.1
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 5.2e-17 92.8 104 57.7
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 1.5e-16 91.3 166 30.7
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 2.0e-16 90.9 105 51.4
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 4.9e-15 86.3 185 32.4
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.0e-12 76.3 77 51.9
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.0e-12 76.3 151 31.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.5e-11 74.7 82 46.3
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.9e-11 74.3 151 30.5
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 6.2e-10 69.3 59 59.3
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 6.8e-09 65.9 71 49.3
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 3.4e-08 63.5 91 38.5
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.4e-08 63.5 126 34.1
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 5.8e-08 62.8 48 58.3
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 8.3e-07 58.9 54 51.9
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.4e-06 57.4 102 36.3


User provided reference genes

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