Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 0.0e+00 1446.8 769 100.0
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 2.3e-92 344.4 725 37.8
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 8.3e-74 282.7 684 32.2
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 4.1e-73 280.4 614 34.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.6e-72 278.5 642 34.3
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 7.8e-72 276.2 685 33.6
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.3e-71 275.4 688 33.3
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 3.9e-71 273.9 646 34.4
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 8.6e-71 272.7 689 33.1
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.1e-70 272.3 708 31.6
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.1e-70 272.3 656 33.2
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.9e-70 271.6 691 32.4
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.6e-70 270.0 704 32.4
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 7.3e-70 269.6 692 32.7
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 9.5e-70 269.2 696 32.9
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.2e-69 268.9 568 35.9
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 2.8e-69 267.7 659 32.9
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 8.0e-69 266.2 640 33.6
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 2.3e-68 264.6 634 34.1
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 3.1e-68 264.2 645 33.5
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 3.1e-68 264.2 683 32.8
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 6.8e-68 263.1 603 34.5
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 6.8e-68 263.1 687 31.4
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.8e-68 263.1 646 33.3
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 6.8e-68 263.1 644 32.6
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 6.8e-68 263.1 653 33.1
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 6.8e-68 263.1 689 32.2
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.5e-67 261.9 693 31.7
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.5e-67 261.9 644 32.5
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.5e-67 261.9 646 33.1
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.0e-67 261.5 695 31.8
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 2.0e-67 261.5 646 32.2
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 3.4e-67 260.8 640 32.5
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.4e-67 260.8 647 32.9
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 3.4e-67 260.8 634 33.1
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 4.4e-67 260.4 700 31.9
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.5e-67 259.6 652 33.3
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 7.5e-67 259.6 673 32.2
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 9.8e-67 259.2 659 32.3
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 9.8e-67 259.2 698 32.8
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.3e-66 258.8 676 32.2
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.7e-66 258.5 644 32.6
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 1.7e-66 258.5 704 32.1
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.7e-66 258.5 702 31.9
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 2.2e-66 258.1 701 32.7
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.2e-66 258.1 695 31.8
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.9e-66 256.9 647 32.3
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 6.4e-66 256.5 605 34.2
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.4e-66 256.5 695 31.7
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 6.4e-66 256.5 699 31.9
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.3e-66 256.1 698 31.5
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 8.3e-66 256.1 640 32.3
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.4e-65 255.4 653 32.2
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.4e-65 255.4 746 31.5
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.9e-65 255.0 659 32.0
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-65 254.6 663 32.1
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 2.4e-65 254.6 637 32.0
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 2.4e-65 254.6 653 31.9
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.2e-65 254.2 612 34.3
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 4.1e-65 253.8 657 32.9
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 5.4e-65 253.4 437 39.6
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 7.0e-65 253.1 653 32.2
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 9.2e-65 252.7 651 32.7
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.2e-64 252.3 693 31.2
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 1.2e-64 252.3 687 32.6
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.6e-64 251.9 646 33.0
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.1e-64 251.5 655 31.8
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 2.7e-64 251.1 585 34.7
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 6.0e-64 250.0 643 32.2
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 6.0e-64 250.0 611 33.1
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 7.8e-64 249.6 661 31.8
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 7.8e-64 249.6 616 32.1
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 7.8e-64 249.6 698 31.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.0e-63 249.2 618 33.0
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 1.0e-63 249.2 702 31.5
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.0e-63 249.2 692 30.6
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.0e-63 249.2 706 30.7
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.0e-63 249.2 698 32.1
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 2.3e-63 248.1 634 33.1
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 2.3e-63 248.1 642 32.7
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.0e-63 247.7 656 31.9
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 3.9e-63 247.3 612 32.5
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 6.6e-63 246.5 631 32.5
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 8.6e-63 246.1 640 32.2
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 8.6e-63 246.1 630 32.2
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.1e-62 245.7 644 31.1
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.1e-62 245.7 644 32.1
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 3.3e-62 244.2 706 31.3
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 4.3e-62 243.8 692 31.2
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.3e-62 243.8 651 31.6
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 9.5e-62 242.7 656 32.2
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.2e-61 242.3 610 32.5
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.6e-61 241.9 703 31.0
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 2.1e-61 241.5 636 31.9
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 2.1e-61 241.5 685 30.4
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.8e-61 241.1 641 30.7
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 6.2e-61 240.0 655 31.5
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 1.1e-60 239.2 614 33.1
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 1.1e-60 239.2 659 31.4
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.1e-60 239.2 686 31.3
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.4e-60 238.8 677 31.5
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.4e-60 238.8 644 31.4
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.4e-60 238.8 610 32.1
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.8e-60 238.4 607 31.8
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 2.3e-60 238.0 622 30.7
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.3e-60 238.0 649 30.8
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 4.0e-60 237.3 644 30.7
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 5.2e-60 236.9 574 33.3
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 6.8e-60 236.5 583 32.9
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.2e-59 235.7 686 32.5
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.5e-59 235.3 644 30.7
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.5e-59 235.3 387 40.1
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 2.0e-59 235.0 661 31.3
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 2.0e-59 235.0 564 33.0
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.0e-59 235.0 698 30.7
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 9.9e-59 232.6 656 30.0
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 1.3e-58 232.3 663 31.2
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 1.3e-58 232.3 663 31.2
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 2.2e-58 231.5 663 30.8
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.4e-57 228.8 703 30.6
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.6e-56 225.3 618 31.1
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 3.5e-56 224.2 574 32.9
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.6e-56 223.8 654 30.9
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.6e-56 223.8 318 41.8
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 1.3e-55 222.2 569 32.3
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 8.6e-55 219.5 744 29.3
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-54 218.8 675 31.1
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-54 218.4 675 31.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.6e-53 215.3 533 34.3
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.1e-52 212.6 609 30.2
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.4e-52 212.2 689 29.6
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.1e-52 211.1 608 29.9
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 1.2e-51 209.1 692 28.9
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 1.2e-51 209.1 630 31.6
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 5.8e-51 206.8 357 38.9
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 7.6e-51 206.5 675 31.1
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 9.2e-49 199.5 543 31.5
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.7e-48 198.0 657 30.3
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 7.8e-48 196.4 373 37.8
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 7.8e-48 196.4 643 30.5
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 1.0e-47 196.1 710 28.5
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 3.3e-46 191.0 610 29.5
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 7.3e-46 189.9 329 39.8
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 6.9e-44 183.3 579 29.5
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.8e-43 180.3 519 30.6
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 1.0e-39 169.5 300 38.7
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.2e-35 156.0 331 36.3
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 5.8e-35 153.7 313 35.5
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 4.9e-34 150.6 186 45.7
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 5.1e-31 140.6 457 31.1
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.8e-29 134.0 603 26.2
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 4.2e-25 120.9 144 46.5
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-24 119.4 152 48.0
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.5e-24 117.9 175 41.7
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.2e-17 94.4 199 34.7
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 1.0e-15 89.7 282 30.5
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.3e-14 84.7 216 31.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-10 71.2 88 47.7
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-09 68.9 88 46.6
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.5e-09 68.6 87 48.3
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 9.4e-09 66.6 97 36.1
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.0e-06 58.9 95 40.0


User provided reference genes

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