Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 2.3e-168 595.5 310 100.0
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.6e-18 97.1 159 42.1
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 7.6e-18 95.5 130 43.1
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.3e-17 94.7 109 47.7
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.7e-17 94.4 79 58.2
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 2.9e-17 93.6 139 40.3
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 3.8e-17 93.2 103 43.7
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 4.9e-17 92.8 109 43.1
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 8.4e-17 92.0 108 46.3
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.4e-16 91.3 149 39.6
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.4e-16 90.5 149 39.6
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 4.2e-16 89.7 80 56.2
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 4.2e-16 89.7 74 58.1
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 4.2e-16 89.7 115 45.2
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 5.4e-16 89.4 73 58.9
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.4e-16 89.4 153 37.9
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 5.4e-16 89.4 73 58.9
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.4e-16 89.4 122 41.8
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 7.1e-16 89.0 144 40.3
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 9.3e-16 88.6 106 49.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 9.3e-16 88.6 110 42.7
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.2e-15 88.2 134 40.3
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.2e-15 88.2 114 46.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.6e-15 87.8 133 39.1
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.1e-15 87.4 147 38.1
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 2.1e-15 87.4 73 56.2
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 2.1e-15 87.4 145 41.4
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.1e-15 87.4 111 41.4
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.1e-15 87.4 73 56.2
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.7e-15 87.0 79 51.9
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 2.7e-15 87.0 153 39.2
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.7e-15 87.0 77 54.5
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.7e-15 87.0 73 56.2
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 2.7e-15 87.0 114 43.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 2.7e-15 87.0 132 40.2
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 3.5e-15 86.7 153 39.9
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 3.5e-15 86.7 73 56.2
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.5e-15 86.7 153 37.3
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 3.5e-15 86.7 153 37.3
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 4.6e-15 86.3 117 41.9
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 4.6e-15 86.3 117 41.9
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 6.0e-15 85.9 73 57.5
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 7.8e-15 85.5 77 50.6
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 7.8e-15 85.5 172 34.9
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 7.8e-15 85.5 149 37.6
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 7.8e-15 85.5 77 51.9
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 7.8e-15 85.5 140 35.7
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.0e-14 85.1 169 36.1
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.0e-14 85.1 169 36.1
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.0e-14 85.1 168 33.3
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.3e-14 84.7 123 41.5
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.3e-14 84.7 77 53.2
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.3e-14 84.7 161 36.6
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.7e-14 84.3 79 51.9
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.3e-14 84.0 153 37.3
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.3e-14 84.0 142 38.7
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 2.3e-14 84.0 77 50.6
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.3e-14 84.0 167 37.1
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.3e-14 84.0 96 45.8
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 3.0e-14 83.6 88 48.9
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.0e-14 83.6 145 40.0
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 3.0e-14 83.6 142 38.7
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 3.0e-14 83.6 73 53.4
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 3.0e-14 83.6 73 56.2
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 3.0e-14 83.6 73 56.2
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 3.0e-14 83.6 77 54.5
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 3.9e-14 83.2 77 51.9
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 3.9e-14 83.2 74 54.1
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 3.9e-14 83.2 77 57.1
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.9e-14 83.2 114 40.4
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 6.6e-14 82.4 122 37.7
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 8.7e-14 82.0 77 55.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 8.7e-14 82.0 154 35.1
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.1e-13 81.6 77 49.4
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.1e-13 81.6 77 55.8
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.1e-13 81.6 121 39.7
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.1e-13 81.6 101 43.6
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 1.1e-13 81.6 94 50.0
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.5e-13 81.3 77 50.6
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.5e-13 81.3 77 50.6
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.5e-13 81.3 77 49.4
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.9e-13 80.9 74 51.4
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.5e-13 80.5 77 51.9
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 3.3e-13 80.1 73 53.4
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.3e-13 80.1 73 50.7
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 3.3e-13 80.1 75 56.0
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.3e-13 80.1 166 37.3
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 3.3e-13 80.1 77 49.4
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 4.3e-13 79.7 134 35.8
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 4.3e-13 79.7 73 53.4
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 4.3e-13 79.7 73 49.3
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 4.3e-13 79.7 73 53.4
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 5.6e-13 79.3 167 36.5
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 5.6e-13 79.3 98 48.0
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.6e-13 79.3 75 50.7
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 7.3e-13 79.0 121 37.2
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 9.6e-13 78.6 84 45.2
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 9.6e-13 78.6 167 35.9
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 9.6e-13 78.6 74 50.0
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.6e-12 77.8 76 52.6
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.6e-12 77.8 75 54.7
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 2.1e-12 77.4 152 37.5
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 2.1e-12 77.4 75 54.7
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 2.1e-12 77.4 139 34.5
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 2.8e-12 77.0 75 54.7
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 2.8e-12 77.0 77 48.1
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.6e-12 76.6 162 35.2
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 4.8e-12 76.3 75 52.0
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 8.1e-12 75.5 73 50.7
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 8.1e-12 75.5 114 43.0
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 8.1e-12 75.5 90 48.9
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.1e-11 75.1 139 38.8
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.1e-11 75.1 83 51.8
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.1e-11 75.1 141 38.3
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.8e-11 74.3 78 50.0
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 1.8e-11 74.3 78 50.0
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.8e-11 74.3 79 46.8
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.4e-11 73.9 66 51.5
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 2.4e-11 73.9 75 52.0
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.4e-11 73.9 148 36.5
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 3.1e-11 73.6 67 52.2
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 3.1e-11 73.6 134 37.3
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 4.0e-11 73.2 150 34.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 4.0e-11 73.2 134 37.3
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 6.9e-11 72.4 75 50.7
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.5e-10 71.2 86 47.7
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.0e-10 70.9 147 34.7
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.0e-10 70.9 147 34.7
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.6e-10 70.5 137 34.3
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.6e-10 70.5 77 45.5
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 3.4e-10 70.1 78 46.2
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.4e-10 70.1 80 42.5
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.8e-10 69.3 63 50.8
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 5.8e-10 69.3 63 50.8
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 7.6e-10 68.9 134 37.3
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.7e-09 67.8 134 35.8
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.9e-09 67.0 121 36.4
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 3.2e-08 63.5 55 52.7
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 5.4e-08 62.8 82 42.7
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 8.7e-06 55.5 135 31.1


User provided reference genes

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