Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.3e-40 168.3 79 100.0
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 9.6e-26 119.8 77 71.4
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 3.6e-25 117.9 75 68.0
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 3.1e-24 114.8 66 74.2
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.2e-24 114.0 71 69.0
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.2e-24 114.0 71 69.0
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 9.9e-23 109.8 71 60.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.3e-22 109.4 66 68.2
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.7e-22 109.0 71 63.4
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.9e-22 107.5 71 62.0
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.9e-22 107.5 71 63.4
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 4.9e-22 107.5 71 60.6
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 6.4e-22 107.1 71 64.8
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 8.4e-22 106.7 71 62.0
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 8.4e-22 106.7 71 59.2
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-21 106.3 71 60.6
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.1e-21 106.3 78 60.3
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.4e-21 105.9 71 60.6
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.4e-21 105.9 69 62.3
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 1.4e-21 105.9 69 60.9
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.9e-21 105.5 71 60.6
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.9e-21 105.5 71 60.6
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.9e-21 105.5 71 62.0
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.9e-21 105.5 69 62.3
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.9e-21 105.5 69 62.3
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.9e-21 105.5 69 62.3
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.9e-21 105.5 71 63.4
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 2.4e-21 105.1 71 60.6
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.4e-21 105.1 71 60.6
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 2.4e-21 105.1 71 60.6
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.4e-21 105.1 69 62.3
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 2.4e-21 105.1 71 62.0
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 2.4e-21 105.1 71 62.0
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 2.4e-21 105.1 71 60.6
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 3.2e-21 104.8 71 57.7
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.2e-21 104.8 71 60.6
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 3.2e-21 104.8 71 60.6
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 3.2e-21 104.8 71 59.2
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 4.2e-21 104.4 71 59.2
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 4.2e-21 104.4 71 59.2
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 4.2e-21 104.4 71 59.2
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 4.2e-21 104.4 71 59.2
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 4.2e-21 104.4 71 59.2
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 5.4e-21 104.0 72 59.7
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.4e-21 104.0 72 59.7
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.4e-21 104.0 72 59.7
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.4e-21 104.0 72 59.7
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.4e-21 104.0 72 59.7
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.4e-21 104.0 78 57.7
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.4e-21 104.0 78 57.7
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 5.4e-21 104.0 71 59.2
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 7.1e-21 103.6 71 59.2
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 7.1e-21 103.6 71 59.2
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 7.1e-21 103.6 71 60.6
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 7.1e-21 103.6 61 70.5
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 7.1e-21 103.6 71 59.2
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 7.1e-21 103.6 71 56.3
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 7.1e-21 103.6 71 57.7
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 9.3e-21 103.2 71 57.7
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 9.3e-21 103.2 72 59.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 9.3e-21 103.2 71 56.3
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 9.3e-21 103.2 71 60.6
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 9.3e-21 103.2 67 67.2
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 9.3e-21 103.2 71 54.9
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.2e-20 102.8 71 56.3
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.2e-20 102.8 71 56.3
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 1.2e-20 102.8 71 56.3
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.2e-20 102.8 71 56.3
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.2e-20 102.8 71 56.3
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.2e-20 102.8 71 59.2
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 2.1e-20 102.1 71 57.7
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.1e-20 102.1 71 59.2
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.1e-20 102.1 71 59.2
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 2.1e-20 102.1 71 56.3
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.1e-20 102.1 66 62.1
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 2.1e-20 102.1 71 56.3
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.7e-20 101.7 66 62.1
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 2.7e-20 101.7 71 57.7
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 2.7e-20 101.7 69 56.5
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.7e-20 101.7 66 59.1
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 4.6e-20 100.9 66 59.1
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 4.6e-20 100.9 74 54.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 6.0e-20 100.5 71 57.7
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.3e-19 99.4 68 57.4
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.7e-19 99.0 76 56.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.3e-19 98.6 69 58.0
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 5.1e-19 97.4 61 63.9
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 8.7e-19 96.7 69 59.4
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.9e-18 95.5 66 54.5
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.5e-18 95.1 71 54.9
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 4.3e-18 94.4 83 49.4
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 4.3e-18 94.4 71 54.9
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 5.6e-18 94.0 80 50.0
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 5.6e-18 94.0 71 59.2
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 7.3e-18 93.6 71 54.9
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 7.3e-18 93.6 71 54.9
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.3e-17 92.8 71 53.5
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.6e-17 92.4 76 50.0
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 3.6e-17 91.3 57 64.9
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 3.6e-17 91.3 57 64.9
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.8e-17 90.9 73 50.7
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 6.2e-17 90.5 86 47.7
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.4e-16 89.4 56 62.5
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 1.8e-16 89.0 71 53.5
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.8e-16 89.0 54 66.7
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.8e-16 89.0 66 57.6
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.8e-16 89.0 71 52.1
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.4e-16 88.6 75 48.0
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.4e-16 88.6 59 61.0
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.4e-16 88.6 64 54.7
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 3.1e-16 88.2 75 48.0
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 4.0e-16 87.8 100 41.0
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 4.0e-16 87.8 71 52.1
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 5.3e-16 87.4 71 49.3
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 9.0e-16 86.7 52 65.4
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 9.0e-16 86.7 71 49.3
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 9.0e-16 86.7 71 47.9
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 9.0e-16 86.7 71 47.9
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 9.0e-16 86.7 71 47.9
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-15 86.3 71 50.7
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.2e-15 86.3 56 60.7
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.2e-15 86.3 71 49.3
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.2e-15 86.3 71 49.3
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.2e-15 86.3 52 69.2
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.2e-15 86.3 57 61.4
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 1.5e-15 85.9 71 50.7
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 1.5e-15 85.9 55 60.0
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.5e-15 85.9 71 49.3
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.0e-15 85.5 72 50.0
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 2.6e-15 85.1 71 49.3
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 3.4e-15 84.7 55 60.0
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 4.5e-15 84.3 52 63.5
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.3e-14 82.8 66 50.0
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.3e-14 82.8 66 57.6
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 1.7e-14 82.4 51 62.7
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 1.7e-14 82.4 71 47.9
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 2.9e-14 81.6 57 56.1
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.9e-14 80.9 78 51.3
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 1.4e-13 79.3 71 45.1
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.4e-13 79.3 71 45.1
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.4e-13 79.3 57 56.1
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 4.2e-13 77.8 71 43.7
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 5.4e-13 77.4 71 47.9
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 4.6e-12 74.3 46 63.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.3e-11 72.8 74 41.9
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.8e-11 72.4 89 40.4
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.8e-11 72.4 66 47.0
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.8e-11 72.4 56 50.0
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 5.1e-11 70.9 71 43.7
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 4.3e-10 67.8 51 52.9
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 7.4e-10 67.0 60 51.7
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 7.4e-10 67.0 56 48.2
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 4.8e-09 64.3 57 49.1
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 4.8e-09 64.3 54 51.9
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 1.8e-08 62.4 73 35.6
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 1.5e-07 59.3 55 49.1
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 1.3e-06 56.2 63 39.7


User provided reference genes

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