Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.0e-162 575.9 317 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 7.2e-32 142.1 131 52.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 8.0e-31 138.7 140 48.6
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 8.8e-30 135.2 140 47.1
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 3.4e-29 133.3 157 44.6
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 5.7e-29 132.5 141 48.9
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 9.8e-29 131.7 138 46.4
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 9.8e-29 131.7 141 48.2
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-28 131.0 128 49.2
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.7e-28 131.0 150 44.0
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.2e-28 130.6 137 45.3
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 2.2e-28 130.6 132 45.5
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.8e-28 130.2 147 48.3
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.7e-28 129.8 135 46.7
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.7e-28 129.8 143 47.6
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 4.8e-28 129.4 140 47.9
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 8.3e-28 128.6 141 46.8
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 8.3e-28 128.6 143 46.9
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.1e-27 128.3 140 46.4
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.4e-27 127.9 138 47.8
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.4e-27 127.9 137 44.5
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.1e-27 126.7 142 44.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 7.0e-27 125.6 136 46.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 7.0e-27 125.6 138 43.5
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.0e-27 125.6 156 41.0
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.7e-26 123.6 142 45.8
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 5.9e-26 122.5 124 46.0
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 5.9e-26 122.5 138 44.9
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 7.7e-26 122.1 131 46.6
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.3e-25 121.3 145 45.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.3e-25 121.3 146 42.5
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.7e-25 120.9 143 44.8
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.7e-25 120.9 142 43.7
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 3.8e-25 119.8 126 45.2
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 5.0e-25 119.4 126 43.7
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 6.5e-25 119.0 156 39.1
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 8.6e-25 118.6 135 41.5
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 8.6e-25 118.6 152 41.4
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.1e-24 118.2 126 43.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.9e-24 117.5 135 43.0
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.9e-24 117.5 135 43.7
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.2e-24 116.3 131 43.5
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 7.2e-24 115.5 133 39.1
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 7.2e-24 115.5 136 44.9
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 9.5e-24 115.2 126 42.9
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.6e-23 114.4 146 43.8
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 2.1e-23 114.0 143 42.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.1e-23 114.0 136 44.9
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.6e-23 113.2 136 43.4
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.6e-23 113.2 136 42.6
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 3.6e-23 113.2 111 47.7
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 8.0e-23 112.1 126 41.3
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-22 111.3 147 39.5
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 4.0e-22 109.8 114 48.2
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.2e-22 109.4 129 45.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 5.2e-22 109.4 123 39.8
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.2e-21 108.2 141 44.0
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.5e-21 107.8 155 40.6
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 4.4e-21 106.3 137 39.4
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 7.5e-21 105.5 140 39.3
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 9.8e-21 105.1 118 44.1
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.3e-20 104.8 118 44.1
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.7e-20 104.4 134 44.8
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 2.2e-20 104.0 124 41.9
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.2e-20 104.0 119 42.9
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.2e-20 104.0 114 47.4
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.8e-20 103.6 118 44.1
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 2.8e-20 103.6 126 43.7
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 2.8e-20 103.6 97 47.4
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 2.8e-20 103.6 116 44.0
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.8e-20 103.6 116 45.7
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 2.8e-20 103.6 128 41.4
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.8e-20 103.6 152 38.8
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.8e-20 103.6 117 46.2
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 3.7e-20 103.2 114 44.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 6.3e-20 102.4 101 48.5
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.3e-20 102.4 123 44.7
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 8.3e-20 102.1 126 41.3
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 8.3e-20 102.1 118 42.4
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.4e-19 101.3 112 43.8
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.1e-19 100.1 144 40.3
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.1e-19 100.1 114 43.9
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 4.1e-19 99.8 120 43.3
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 5.4e-19 99.4 129 40.3
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 5.4e-19 99.4 120 43.3
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 7.0e-19 99.0 117 42.7
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 9.2e-19 98.6 112 45.5
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 9.2e-19 98.6 114 43.9
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 9.2e-19 98.6 112 43.8
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 9.2e-19 98.6 112 45.5
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 9.2e-19 98.6 124 39.5
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 9.2e-19 98.6 123 43.9
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.2e-18 98.2 117 44.4
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.2e-18 98.2 115 44.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.2e-18 98.2 119 40.3
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.6e-18 97.8 113 45.1
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.6e-18 97.8 113 45.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.6e-18 97.8 117 42.7
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.6e-18 97.8 195 34.4
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.0e-18 97.4 114 43.9
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.0e-18 97.4 118 41.5
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.0e-18 97.4 112 43.8
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.7e-18 97.1 114 43.9
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 3.5e-18 96.7 112 43.8
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 4.5e-18 96.3 119 43.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.5e-18 96.3 110 44.5
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.5e-18 96.3 128 38.3
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.5e-18 96.3 128 38.3
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.9e-18 95.9 112 42.9
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.9e-18 95.9 112 42.9
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 7.8e-18 95.5 118 41.5
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.0e-17 95.1 110 44.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.3e-17 94.7 110 43.6
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.3e-17 94.7 117 41.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.7e-17 94.4 107 44.9
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 2.3e-17 94.0 99 46.5
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.8e-17 93.2 114 43.0
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.8e-17 93.2 96 50.0
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.0e-17 92.8 123 40.7
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.0e-17 92.8 120 40.0
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 5.0e-17 92.8 113 40.7
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 8.6e-17 92.0 112 44.6
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 8.6e-17 92.0 94 44.7
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.1e-16 91.7 94 44.7
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.5e-16 91.3 139 38.1
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.5e-16 91.3 124 40.3
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.5e-16 91.3 134 35.8
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 3.3e-16 90.1 121 39.7
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 4.3e-16 89.7 115 40.9
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 4.3e-16 89.7 115 40.9
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 4.3e-16 89.7 130 37.7
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 7.3e-16 89.0 124 40.3
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 9.5e-16 88.6 93 46.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.2e-15 88.2 114 38.6
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.6e-15 87.8 116 39.7
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 2.8e-15 87.0 129 38.0
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 3.6e-15 86.7 127 38.6
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 3.6e-15 86.7 136 38.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.7e-15 86.3 160 33.1
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.7e-15 86.3 139 36.0
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.0e-14 85.1 127 38.6
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-14 84.7 127 39.4
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.8e-14 84.3 146 34.2
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 2.3e-14 84.0 118 37.3
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.0e-14 83.6 112 40.2
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 5.2e-14 82.8 139 36.0
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.4e-13 79.7 171 31.0
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.7e-13 79.3 108 38.9
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 1.7e-12 77.8 147 33.3
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 4.9e-12 76.3 172 29.7
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-11 74.7 129 36.4
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-11 74.3 71 46.5
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.1e-11 73.2 71 46.5
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.0e-11 72.4 71 45.1
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.5e-10 70.1 90 41.1
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 2.3e-09 67.4 67 46.3
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.5e-08 64.7 105 39.0
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 1.9e-08 64.3 63 44.4
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 4.3e-08 63.2 82 42.7
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.6e-07 60.1 71 46.5
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 4.7e-07 59.7 71 42.3
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-06 58.5 75 34.7
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-06 58.5 75 34.7
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 3.1e-06 57.0 137 27.0
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 5.2e-06 56.2 72 44.4
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 5.2e-06 56.2 72 44.4


User provided reference genes

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