Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.7e-183 645.2 322 100.0
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 7.9e-103 377.9 253 71.1
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.1e-101 374.0 253 70.8
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 2.0e-101 373.2 253 70.4
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.6e-101 372.9 290 64.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 4.4e-101 372.1 253 70.4
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.3e-100 370.5 257 68.9
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.3e-100 370.5 252 70.2
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.8e-100 369.4 255 68.6
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 3.7e-100 369.0 255 69.0
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.7e-100 369.0 255 68.6
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.8e-100 368.6 250 70.4
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.8e-100 368.6 260 68.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 6.3e-100 368.2 256 68.4
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.3e-100 368.2 287 64.1
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 6.3e-100 368.2 253 69.6
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 6.3e-100 368.2 253 68.8
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 6.3e-100 368.2 250 70.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 6.3e-100 368.2 252 69.0
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 8.2e-100 367.9 255 68.6
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.2e-100 367.9 255 68.2
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 8.2e-100 367.9 286 64.0
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.1e-99 367.5 257 68.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-99 367.5 252 69.4
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 1.1e-99 367.5 255 68.6
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.1e-99 367.5 252 70.2
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.4e-99 367.1 255 69.0
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 1.4e-99 367.1 301 63.5
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.4e-99 367.1 255 68.6
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.8e-99 366.7 252 69.0
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.8e-99 366.7 252 69.0
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.8e-99 366.7 253 70.4
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.4e-99 366.3 298 61.7
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 2.4e-99 366.3 253 68.8
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 2.4e-99 366.3 253 68.8
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 2.4e-99 366.3 253 68.8
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 2.4e-99 366.3 253 68.8
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 2.4e-99 366.3 253 68.8
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 2.4e-99 366.3 255 69.8
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 2.4e-99 366.3 245 71.0
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 3.1e-99 365.9 255 68.6
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 3.1e-99 365.9 252 69.0
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.1e-99 365.5 293 61.8
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 4.1e-99 365.5 251 70.1
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 4.1e-99 365.5 255 68.6
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 5.3e-99 365.2 255 69.0
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 5.3e-99 365.2 250 69.6
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.3e-99 365.2 289 63.0
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 7.0e-99 364.8 255 68.2
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 9.1e-99 364.4 250 69.2
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-98 364.0 248 70.2
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.2e-98 364.0 252 67.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.2e-98 364.0 289 63.3
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-98 363.6 255 68.6
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.6e-98 363.6 250 68.8
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.6e-98 363.6 253 69.6
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 2.0e-98 363.2 253 68.0
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.0e-98 363.2 253 68.8
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.0e-98 363.2 256 68.0
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.6e-98 362.8 252 68.7
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 2.6e-98 362.8 250 68.8
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 2.6e-98 362.8 252 68.3
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.5e-98 362.5 255 67.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 3.5e-98 362.5 255 68.2
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.5e-98 362.5 252 68.3
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 3.5e-98 362.5 255 67.5
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.5e-98 362.1 301 60.8
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 4.5e-98 362.1 251 68.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 4.5e-98 362.1 251 68.9
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 5.9e-98 361.7 255 69.0
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.9e-98 361.7 252 68.3
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 5.9e-98 361.7 253 68.4
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 5.9e-98 361.7 255 68.2
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 7.7e-98 361.3 252 69.0
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 7.7e-98 361.3 255 69.0
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 7.7e-98 361.3 250 68.4
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 7.7e-98 361.3 250 68.8
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 7.7e-98 361.3 289 61.9
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.0e-97 360.9 250 68.8
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.3e-97 360.5 297 62.3
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.7e-97 360.1 255 68.6
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.7e-97 360.1 289 61.9
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.7e-97 360.1 257 66.9
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.2e-97 359.8 252 67.9
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.2e-97 359.8 255 67.1
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.2e-97 359.8 289 61.9
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.9e-97 359.4 289 62.3
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.9e-97 359.4 284 63.7
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 2.9e-97 359.4 258 67.4
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 2.9e-97 359.4 262 67.2
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.8e-97 359.0 309 62.1
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 3.8e-97 359.0 289 62.3
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.8e-97 359.0 248 69.0
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 3.8e-97 359.0 259 67.6
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.0e-97 358.6 252 67.9
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 6.5e-97 358.2 248 69.4
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 8.5e-97 357.8 252 67.9
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.1e-96 357.5 288 62.5
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.5e-96 357.1 289 61.6
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.5e-96 357.1 289 61.6
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.5e-96 357.1 287 61.7
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.5e-96 357.1 289 61.6
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.9e-96 356.7 248 68.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.2e-96 355.9 258 67.4
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 3.2e-96 355.9 280 62.9
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 4.2e-96 355.5 253 68.4
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 7.2e-96 354.8 289 61.2
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 7.2e-96 354.8 252 69.0
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.4e-96 354.4 289 62.3
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.2e-95 354.0 250 68.0
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.6e-95 353.6 301 59.8
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 3.6e-95 352.4 250 68.0
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 6.1e-95 351.7 288 61.1
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.8e-94 350.1 250 67.2
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 2.0e-93 346.7 300 60.0
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 7.5e-93 344.7 287 61.3
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 7.5e-93 344.7 316 57.6
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 4.1e-91 339.0 272 63.6
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.7e-90 336.3 252 66.3
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-89 334.3 227 69.2
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.2e-89 333.2 285 60.7
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.9e-89 332.8 280 59.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 3.2e-88 329.3 268 62.3
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.6e-87 325.9 260 62.7
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 8.0e-87 324.7 252 64.7
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.0e-85 320.1 221 68.3
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 2.6e-85 319.7 222 69.4
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 7.5e-85 318.2 221 67.4
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 3.7e-84 315.8 245 64.1
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-83 314.3 337 51.0
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.1e-83 312.8 218 68.8
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.1e-83 312.8 218 68.8
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 4.5e-82 308.9 268 58.2
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 7.7e-82 308.1 253 61.7
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 6.8e-78 295.0 200 68.5
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.0e-73 281.2 193 68.4
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.1e-71 273.5 200 65.5
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.8e-70 270.4 182 69.8
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 6.4e-68 261.9 182 67.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 7.8e-66 255.0 258 52.7
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 8.0e-63 245.0 205 59.5
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 8.9e-62 241.5 174 64.9
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.2e-58 231.1 194 60.8
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.0e-58 230.3 196 62.8
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 4.6e-58 229.2 150 73.3
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 5.0e-57 225.7 152 69.1
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.0e-49 199.9 143 65.7
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.0e-49 199.9 265 46.0
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.2e-47 194.5 209 51.7
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 3.2e-35 153.3 120 55.8
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 5.1e-33 146.0 176 47.7
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 1.9e-32 144.1 301 33.2
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 6.2e-31 139.0 155 47.1
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.4e-30 137.9 136 52.2
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 6.9e-30 135.6 105 57.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 4.9e-28 129.4 86 68.6
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.7e-26 123.6 96 57.3
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.8e-25 120.9 170 42.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 1.2e-21 108.2 191 39.8
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 4.5e-21 106.3 66 75.8
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 4.5e-21 106.3 66 75.8
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.9e-20 103.6 76 64.5
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 8.4e-12 75.5 78 51.3
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 5.5e-11 72.8 54 68.5
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 1.9e-08 64.3 53 54.7
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 5.7e-08 62.8 158 31.6
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 7.4e-08 62.4 92 39.1
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 9.6e-08 62.0 123 34.1
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-07 60.5 85 38.8


User provided reference genes

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