Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31213 Chara braunii HOM05D001779 ORTHO05D001753 1.1e-263 912.9 513 100.0
Ciclev10020011m.g Citrus clementina HOM05D001779 ORTHO05D001753 8.7e-11 72.8 99 32.3
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 3.3e-10 70.9 115 29.6
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 4.3e-10 70.5 115 30.4
Os03g0309800 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 7.4e-10 69.7 97 37.1
Peaxi162Scf00071g01040 Petunia axillaris HOM05D001779 ORTHO05D001753 7.4e-10 69.7 102 32.4
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 1.3e-09 68.9 95 29.5
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.3e-09 68.9 115 28.7
CAN.G50.4 Capsicum annuum HOM05D001779 ORTHO05D001753 2.8e-09 67.8 102 32.4
Lalb_Chr19g0125661 Lupinus albus HOM05D001779 ORTHO05D001753 2.8e-09 67.8 95 29.5
Psat3g145680 Pisum sativum HOM05D001779 ORTHO05D001753 2.8e-09 67.8 95 32.6
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 2.8e-09 67.8 95 30.5
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 2.8e-09 67.8 97 36.1
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 3.7e-09 67.4 115 27.8
Lj1g0021736 Lotus japonicus HOM05D001779 ORTHO05D001753 4.8e-09 67.0 95 31.6
Nn1g07882 Nelumbo nucifera HOM05D001779 ORTHO05D001753 6.2e-09 66.6 115 27.0
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 6.2e-09 66.6 115 27.0
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 8.2e-09 66.2 95 30.5
BcaC06g30763 Brassica carinata HOM05D001779 ORTHO05D001753 8.2e-09 66.2 95 30.5
Cc03_g00220 Coffea canephora HOM05D001779 ORTHO05D001753 8.2e-09 66.2 138 26.1
COL.COLO4_34526 Corchorus olitorius HOM05D001779 ORTHO05D001753 8.2e-09 66.2 135 27.4
Duzib151G0917 Durio zibethinus HOM05D001779 ORTHO05D001753 8.2e-09 66.2 123 30.1
TWI18G0520 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 8.2e-09 66.2 95 30.5
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 1.4e-08 65.5 95 29.5
Lsat_1_v5_gn_1_39801 Lactuca sativa HOM05D001779 ORTHO05D001753 1.4e-08 65.5 145 27.6
Nitab4.5_0000087g0090 Nicotiana tabacum HOM05D001779 ORTHO05D001753 1.4e-08 65.5 102 30.4
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 1.4e-08 65.5 95 29.5
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 1.4e-08 65.5 102 31.4
Sopen08g013850 Solanum pennellii HOM05D001779 ORTHO05D001753 1.4e-08 65.5 102 31.4
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 1.8e-08 65.1 95 27.4
ECA232G3256 Erigeron canadensis HOM05D001779 ORTHO05D001753 1.8e-08 65.1 99 28.3
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 1.8e-08 65.1 95 28.4
vmacro08004 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 1.8e-08 65.1 123 30.9
arahy.Tifrunner.gnm1.ann1.P8X82K Arachis hypogaea HOM05D001779 ORTHO05D001753 2.4e-08 64.7 95 27.4
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 2.4e-08 64.7 95 30.5
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 2.4e-08 64.7 98 31.6
Nitab4.5_0001676g0060 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.4e-08 64.7 102 30.4
Potri.008G098700 Populus trichocarpa HOM05D001779 ORTHO05D001753 2.4e-08 64.7 103 31.1
Aa31LG5G16950 Aethionema arabicum HOM05D001779 ORTHO05D001753 3.1e-08 64.3 108 30.6
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 3.1e-08 64.3 102 31.4
PSO674G0008 Papaver somniferum HOM05D001779 ORTHO05D001753 3.1e-08 64.3 117 28.2
Thecc.01G407600 Theobroma cacao HOM05D001779 ORTHO05D001753 3.1e-08 64.3 102 27.5
MSTRG.5036 Avicennia marina HOM05D001779 ORTHO05D001753 4.0e-08 63.9 126 27.0
Ciclev10019744m.g Citrus clementina HOM05D001779 ORTHO05D001753 4.0e-08 63.9 95 28.4
Phvul.008G285500 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 4.0e-08 63.9 133 25.6
Potri.010G153900 Populus trichocarpa HOM05D001779 ORTHO05D001753 4.0e-08 63.9 103 30.1
Sp3g05350 Schrenkiella parvula HOM05D001779 ORTHO05D001753 4.0e-08 63.9 108 29.6
vmacro13689 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 4.0e-08 63.9 126 28.6
A06p38950 Brassica napus HOM05D001779 ORTHO05D001753 5.3e-08 63.5 95 29.5
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 5.3e-08 63.5 95 29.5
ClCG06G004250 Citrullus lanatus HOM05D001779 ORTHO05D001753 5.3e-08 63.5 123 28.5
MELO3C021235.2 Cucumis melo HOM05D001779 ORTHO05D001753 5.3e-08 63.5 123 28.5
ECA233G0980 Erigeron canadensis HOM05D001779 ORTHO05D001753 5.3e-08 63.5 144 26.4
Thhalv10020626m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 5.3e-08 63.5 108 30.6
Manes.12G045500 Manihot esculenta HOM05D001779 ORTHO05D001753 5.3e-08 63.5 95 29.5
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 5.3e-08 63.5 116 31.0
Rhsim07G0058000 Rhododendron simsii HOM05D001779 ORTHO05D001753 5.3e-08 63.5 99 29.3
SalBow6G2927 Salvia bowleyana HOM05D001779 ORTHO05D001753 5.3e-08 63.5 102 28.4
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 5.3e-08 63.5 116 31.9
PGR031G1510 Punica granatum HOM05D001779 ORTHO05D001753 6.9e-08 63.2 97 30.9
SalBow6G6670 Salvia bowleyana HOM05D001779 ORTHO05D001753 6.9e-08 63.2 95 27.4
GSVIVG01017677001 Vitis vinifera HOM05D001779 ORTHO05D001753 6.9e-08 63.2 146 26.0
C07p39380 Brassica napus HOM05D001779 ORTHO05D001753 9.0e-08 62.8 95 29.5
BolC7t44458H Brassica oleracea HOM05D001779 ORTHO05D001753 9.0e-08 62.8 95 29.5
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 9.0e-08 62.8 102 30.4
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 9.0e-08 62.8 95 29.5
Eucgr.A01491 Eucalyptus grandis HOM05D001779 ORTHO05D001753 9.0e-08 62.8 97 29.9
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 9.0e-08 62.8 95 28.4
Nn8g40891 Nelumbo nucifera HOM05D001779 ORTHO05D001753 9.0e-08 62.8 102 28.4
Peaxi162Scf00126g01125 Petunia axillaris HOM05D001779 ORTHO05D001753 9.0e-08 62.8 180 26.1
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 9.0e-08 62.8 115 27.0
Phvul.008G126700 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 9.0e-08 62.8 95 29.5
TWI09G1636 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 9.0e-08 62.8 126 27.0
CSS0002295 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.2e-07 62.4 102 30.4
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 1.2e-07 62.4 95 29.5
Dinv09324 Davidia involucrata HOM05D001779 ORTHO05D001753 1.2e-07 62.4 102 29.4
Migut.D02488 Erythranthe guttata HOM05D001779 ORTHO05D001753 1.2e-07 62.4 131 23.7
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 1.2e-07 62.4 95 28.4
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 1.2e-07 62.4 95 28.4
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.2e-07 62.4 95 27.4
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.2e-07 62.4 95 27.4
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 1.2e-07 62.4 102 29.4
THA.LOC104818854 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 1.2e-07 62.4 108 30.6
CSS0033397 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.5e-07 62.0 95 28.4
CSS0040613 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.5e-07 62.0 132 26.5
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 1.5e-07 62.0 95 28.4
Ciclev10004807m.g Citrus clementina HOM05D001779 ORTHO05D001753 1.5e-07 62.0 104 29.8
Dinv29518 Davidia involucrata HOM05D001779 ORTHO05D001753 1.5e-07 62.0 135 25.9
FAN17G0100 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.5e-07 62.0 97 29.9
Thecc.04G311700 Theobroma cacao HOM05D001779 ORTHO05D001753 1.5e-07 62.0 123 27.6
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 1.5e-07 62.0 145 26.2
TAR636G0056 Trochodendron aralioides HOM05D001779 ORTHO05D001753 1.5e-07 62.0 102 30.4
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 2.0e-07 61.6 142 23.9
FAN07G0256 Fragaria x ananassa HOM05D001779 ORTHO05D001753 2.0e-07 61.6 97 29.9
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.0e-07 61.6 95 29.5
Gohir.D08G064500 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.0e-07 61.6 127 24.4
Gohir.D11G144900 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.0e-07 61.6 95 29.5
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 2.0e-07 61.6 95 29.5
Sed0015503 Sechium edule HOM05D001779 ORTHO05D001753 2.0e-07 61.6 95 30.5
Atru.chr5.2026 Acer truncatum HOM05D001779 ORTHO05D001753 2.6e-07 61.2 95 28.4
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 2.6e-07 61.2 95 28.4
Ca_26872_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 2.6e-07 61.2 89 31.5
Gohir.A10G176300 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.6e-07 61.2 123 27.6
Gorai.011G205100 Gossypium raimondii HOM05D001779 ORTHO05D001753 2.6e-07 61.2 123 27.6
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 2.6e-07 61.2 95 27.4
CANSAT35G0239 Cannabis sativa HOM05D001779 ORTHO05D001753 3.4e-07 60.8 95 29.5
Gohir.D10G183000 Gossypium hirsutum HOM05D001779 ORTHO05D001753 3.4e-07 60.8 123 27.6
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 3.4e-07 60.8 98 28.6
QL06p014037 Quercus lobata HOM05D001779 ORTHO05D001753 3.4e-07 60.8 139 25.9
Rhsim04G0247500 Rhododendron simsii HOM05D001779 ORTHO05D001753 3.4e-07 60.8 136 26.5
Sabra10G0118500 Salix brachista HOM05D001779 ORTHO05D001753 3.4e-07 60.8 97 29.9
SGA_v2.0_scaffold36G14402 Striga asiatica HOM05D001779 ORTHO05D001753 3.4e-07 60.8 127 26.0
Aqoxy2G02534 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 4.5e-07 60.5 98 27.6
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 4.5e-07 60.5 97 32.0
Eucgr.G03360 Eucalyptus grandis HOM05D001779 ORTHO05D001753 4.5e-07 60.5 99 27.3
Gohir.A08G055001 Gossypium hirsutum HOM05D001779 ORTHO05D001753 4.5e-07 60.5 127 23.6
Gorai.004G066800 Gossypium raimondii HOM05D001779 ORTHO05D001753 4.5e-07 60.5 127 23.6
Phvul.009G219100 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 4.5e-07 60.5 105 30.5
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 4.5e-07 60.5 95 27.4
Sed0019547 Sechium edule HOM05D001779 ORTHO05D001753 4.5e-07 60.5 98 28.6
FvH4_4g21400 Fragaria vesca HOM05D001779 ORTHO05D001753 5.8e-07 60.1 97 28.9
Lalb_Chr25g0282471 Lupinus albus HOM05D001779 ORTHO05D001753 5.8e-07 60.1 95 28.4
MD13G1141500 Malus domestica HOM05D001779 ORTHO05D001753 5.8e-07 60.1 123 27.6
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 5.8e-07 60.1 119 27.7
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 5.8e-07 60.1 113 27.4
Prupe.2G028400 Prunus persica HOM05D004271 ORTHO05D006011 5.8e-07 60.1 98 31.6
Sabra09G0042900 Salix brachista HOM05D001779 ORTHO05D001753 5.8e-07 60.1 102 23.5
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 5.8e-07 60.1 136 26.5
TWI09G0293 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 5.8e-07 60.1 135 25.2
Actinidia19409 Actinidia chinensis HOM05D001779 ORTHO05D001753 7.6e-07 59.7 102 27.5
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 7.6e-07 59.7 95 27.4
FAN12G4042 Fragaria x ananassa HOM05D001779 ORTHO05D001753 7.6e-07 59.7 97 28.9
Lalb_Chr07g0181761 Lupinus albus HOM05D001779 ORTHO05D001753 7.6e-07 59.7 97 27.8
MBI17_g35770_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 7.6e-07 59.7 103 30.1
MD16G1137800 Malus domestica HOM05D001779 ORTHO05D001753 7.6e-07 59.7 123 27.6
Pp3c17_2130 Physcomitrium patens HOM05D004127 ORTHO05D023528 7.6e-07 59.7 135 29.6
RcHm_v2.0_Chr4g0427331 Rosa chinensis HOM05D001779 ORTHO05D001753 7.6e-07 59.7 98 27.6
Hund22619 Selenicereus undatus HOM05D001779 ORTHO05D001753 7.6e-07 59.7 102 29.4
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 7.6e-07 59.7 136 27.9
Actinidia07529 Actinidia chinensis HOM05D001779 ORTHO05D001753 1.0e-06 59.3 97 29.9
Aa31sc37G30 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.0e-06 59.3 95 28.4
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 1.0e-06 59.3 102 26.5
BcaC05g29817 Brassica carinata HOM05D001779 ORTHO05D001753 1.0e-06 59.3 108 26.9
A05p41580 Brassica napus HOM05D001779 ORTHO05D001753 1.0e-06 59.3 108 26.9
A05p41600 Brassica napus HOM05D001779 ORTHO05D001753 1.0e-06 59.3 108 26.9
C05p60810 Brassica napus HOM05D001779 ORTHO05D001753 1.0e-06 59.3 108 26.9
BraA05t22879Z Brassica rapa HOM05D001779 ORTHO05D001753 1.0e-06 59.3 108 26.9
CANSAT01G0558 Cannabis sativa HOM05D001779 ORTHO05D001753 1.0e-06 59.3 123 26.8
Solyc01g057200.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 1.0e-06 59.3 136 26.5
CARHR080960 Cardamine hirsuta HOM05D001779 ORTHO05D001753 1.3e-06 58.9 108 29.6
Duzib133G0213 Durio zibethinus HOM05D001779 ORTHO05D001753 1.3e-06 58.9 127 22.0
Manes.03G211100 Manihot esculenta HOM05D001779 ORTHO05D001753 1.3e-06 58.9 103 29.1
Oeu006556.1 Olea europaea HOM05D001779 ORTHO05D001753 1.3e-06 58.9 89 30.3
Hund18390 Selenicereus undatus HOM05D001779 ORTHO05D001753 1.3e-06 58.9 95 27.4
BolC5t34738H Brassica oleracea HOM05D001779 ORTHO05D001753 1.7e-06 58.5 108 26.9
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.7e-06 58.5 96 27.1
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.7e-06 58.5 96 27.1
CsaV3_6G000170 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.7e-06 58.5 123 26.8
Lj6A699G68 Lonicera japonica HOM05D001779 ORTHO05D001753 1.7e-06 58.5 123 26.0
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 1.7e-06 58.5 119 27.7
Prupe.1G106700 Prunus persica HOM05D001779 ORTHO05D001753 1.7e-06 58.5 123 26.8
PGR031G1422 Punica granatum HOM05D001779 ORTHO05D001753 1.7e-06 58.5 89 29.2
TPR.G31105 Trifolium pratense HOM05D001779 ORTHO05D001753 1.7e-06 58.5 92 31.5
BcaC05g30026 Brassica carinata HOM05D001779 ORTHO05D001753 2.2e-06 58.2 103 27.2
CBR_g49306 Chara braunii HOM05D005862 ORTHO05D007780 2.2e-06 58.2 104 31.7
HanXRQChr08g0236261 Helianthus annuus HOM05D001779 ORTHO05D001753 2.2e-06 58.2 97 27.8
Lj6A358T55 Lonicera japonica HOM05D001779 ORTHO05D001753 2.2e-06 58.2 95 27.4
Sed0024001 Sechium edule HOM05D001779 ORTHO05D001753 2.2e-06 58.2 89 29.2
Glyma.09G082100 Glycine max HOM05D001779 ORTHO05D001753 2.9e-06 57.8 97 27.8
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 3.8e-06 57.4 93 28.0
Lalb_Chr11g0073511 Lupinus albus HOM05D001779 ORTHO05D001753 3.8e-06 57.4 108 28.7
VMungo1309G1222 Vigna mungo HOM05D001779 ORTHO05D001753 3.8e-06 57.4 109 26.6
AL3G17380 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 4.9e-06 57.0 108 27.8
Carub.0003s0587 Capsella rubella HOM05D001779 ORTHO05D001753 4.9e-06 57.0 108 27.8
PSO063G6602 Papaver somniferum HOM05D001779 ORTHO05D001753 4.9e-06 57.0 98 24.5
PSO782G1225 Papaver somniferum HOM05D001779 ORTHO05D001753 4.9e-06 57.0 98 24.5
HPP92_013691 Vanilla planifolia HOM05D001620 ORTHO05D005461 4.9e-06 57.0 91 27.5
AT3G06430 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 6.5e-06 56.6 108 27.8
Cpa.g.sc146.33 Carica papaya HOM05D001779 ORTHO05D001753 6.5e-06 56.6 98 27.6
Nitab4.5_0000895g0210 Nicotiana tabacum HOM05D001779 ORTHO05D001753 6.5e-06 56.6 97 26.8
AagrBONN_evm.TU.Sc2ySwM_117.1008 Anthoceros agrestis HOM05D006414 ORTHO05D007780 8.4e-06 56.2 127 27.6
Ca_19095_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 8.4e-06 56.2 95 25.3
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 8.4e-06 56.2 112 23.2
Os03g0115300 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 8.4e-06 56.2 95 26.3
SMO356G0418 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 8.4e-06 56.2 127 27.6


User provided reference genes

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