Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 0.0e+00 3828.5 2643 100.0
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 8.1e-36 158.3 808 27.1
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 3.4e-18 99.8 147 36.7
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 3.8e-17 96.3 146 34.2
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 1.9e-16 94.0 142 35.9
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.6e-15 90.9 165 35.8
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 4.6e-15 89.4 146 37.0
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 4.6e-15 89.4 141 33.3
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 6.0e-15 89.0 142 36.6
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 7.9e-15 88.6 141 37.6
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 1.0e-14 88.2 185 28.6
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 1.8e-14 87.4 141 35.5
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 2.3e-14 87.0 141 31.2
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 2.3e-14 87.0 150 37.3
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 2.3e-14 87.0 157 35.7
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 6.7e-14 85.5 142 35.2
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 6.7e-14 85.5 207 30.9
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 6.7e-14 85.5 141 31.2
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 1.1e-13 84.7 174 34.5
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.1e-13 84.7 141 36.2
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.1e-13 84.7 141 36.2
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 1.5e-13 84.3 168 29.8
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 1.5e-13 84.3 141 32.6
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 1.5e-13 84.3 144 34.7
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 2.5e-13 83.6 154 34.4
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 2.5e-13 83.6 143 35.0
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 3.3e-13 83.2 142 35.2
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 4.3e-13 82.8 141 31.2
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 7.4e-13 82.0 142 35.9
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 1.3e-12 81.3 150 31.3
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 1.6e-12 80.9 142 35.9
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 2.2e-12 80.5 142 34.5
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 2.2e-12 80.5 142 35.2
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 2.8e-12 80.1 159 33.3
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 2.8e-12 80.1 145 33.1
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 6.3e-12 79.0 142 33.8
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 6.3e-12 79.0 181 32.0
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 8.2e-12 78.6 207 29.0
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 8.2e-12 78.6 142 35.2
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 8.2e-12 78.6 148 33.8
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 1.1e-11 78.2 154 33.1
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 1.4e-11 77.8 143 32.2
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 1.4e-11 77.8 145 33.1
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 1.4e-11 77.8 145 32.4
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 1.4e-11 77.8 144 32.6
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 3.1e-11 76.6 141 31.9
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 5.3e-11 75.9 142 33.8
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 6.9e-11 75.5 141 30.5
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 9.0e-11 75.1 151 33.1
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 1.2e-10 74.7 148 31.8
CBR_g70703 Chara braunii HOM05D008075 ORTHO05D010208 2.6e-10 73.6 217 28.6
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 2.6e-10 73.6 163 29.4
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 3.4e-10 73.2 133 32.3
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 3.4e-10 73.2 143 30.8
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 4.5e-10 72.8 133 33.1
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 2.2e-09 70.5 164 32.3
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 2.2e-09 70.5 150 34.7
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 6.5e-09 68.9 132 29.5
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 8.5e-09 68.6 141 31.9
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 3.2e-08 66.6 208 28.4
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 5.5e-08 65.9 207 29.5
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 5.5e-08 65.9 120 34.2
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 7.2e-08 65.5 150 33.3
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 2.1e-07 63.9 62 46.8
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 2.1e-07 63.9 133 28.6
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 4.6e-07 62.8 150 32.0


User provided reference genes

Program Settings