Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31147 Chara braunii HOM05D000001 ORTHO05D009286 1.1e-178 629.8 310 100.0
Mapoly0074s0078 Marchantia polymorpha HOM05D000001 ORTHO05D009286 6.6e-54 215.3 246 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2674 Anthoceros agrestis HOM05D000001 ORTHO05D009286 2.6e-50 203.4 208 47.6
Thecc.05G303100 Theobroma cacao HOM05D000001 ORTHO05D009286 1.7e-46 190.7 219 45.7
Pp3c27_1510 Physcomitrium patens HOM05D000001 ORTHO05D009286 8.6e-46 188.3 274 37.6
MBI17_g31750_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009286 5.6e-45 185.7 203 47.3
SMO367G0812 Selaginella moellendorffii HOM05D000001 ORTHO05D009286 9.5e-45 184.9 214 48.6
Cc02_g33430 Coffea canephora HOM05D000001 ORTHO05D009286 1.6e-44 184.1 224 44.6
TWI12G0446 Tripterygium wilfordii HOM05D000001 ORTHO05D009286 1.6e-44 184.1 209 48.8
Dinv40288 Davidia involucrata HOM05D000001 ORTHO05D009286 2.8e-44 183.3 219 45.7
RhsimUnG0226000 Rhododendron simsii HOM05D000001 ORTHO05D009286 6.2e-44 182.2 219 45.7
vmacro05020 Vaccinium macrocarpon HOM05D000001 ORTHO05D009286 8.0e-44 181.8 223 45.7
Duzib177G1137 Durio zibethinus HOM05D000001 ORTHO05D009582 1.4e-43 181.0 219 43.8
Gorai.007G297100 Gossypium raimondii HOM05D000001 ORTHO05D009286 1.4e-43 181.0 209 45.5
Gohir.A11G265100 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.8e-43 180.6 209 45.5
Actinidia23635 Actinidia chinensis HOM05D000001 ORTHO05D009286 4.0e-43 179.5 239 40.6
QL03p007002 Quercus lobata HOM05D000001 ORTHO05D009286 4.0e-43 179.5 222 44.1
Sed0027835 Sechium edule HOM05D000001 ORTHO05D009286 4.0e-43 179.5 219 43.4
Nn1g02236 Nelumbo nucifera HOM05D000001 ORTHO05D009286 6.8e-43 178.7 208 44.2
Atru.chr2.405 Acer truncatum HOM05D000001 ORTHO05D009286 1.2e-42 177.9 209 45.5
Ciclev10002196m.g Citrus clementina HOM05D000001 ORTHO05D009286 1.2e-42 177.9 217 44.2
Gohir.D11G275300 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.2e-42 177.9 209 45.0
TAR362G0463 Trochodendron aralioides HOM05D000001 ORTHO05D009286 2.0e-42 177.2 208 44.2
Zm00001eb287490 Zea mays HOM05D000001 ORTHO05D009286 3.4e-42 176.4 204 48.0
HPP92_013683 Vanilla planifolia HOM05D000001 ORTHO05D009286 4.4e-42 176.0 203 44.3
FvH4_7g03590 Fragaria vesca HOM05D000001 ORTHO05D009286 5.8e-42 175.6 215 42.8
FAN06G3148 Fragaria x ananassa HOM05D000001 ORTHO05D009286 5.8e-42 175.6 221 43.9
CSS0009057 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009286 7.5e-42 175.3 220 42.7
CAN.G1034.26 Capsicum annuum HOM05D000001 ORTHO05D009286 7.5e-42 175.3 214 45.8
Prupe.6G325800 Prunus persica HOM05D000001 ORTHO05D009286 9.8e-42 174.9 206 46.1
Solyc01g099260.3 Solanum lycopersicum HOM05D000001 ORTHO05D009286 9.8e-42 174.9 216 43.1
Eucgr.B01968 Eucalyptus grandis HOM05D000001 ORTHO05D009286 1.3e-41 174.5 247 42.5
CiPaw.07G017900 Carya illinoinensis HOM05D000001 ORTHO05D009286 2.2e-41 173.7 215 41.9
DCAR_024833 Daucus carota HOM05D000001 ORTHO05D009286 2.2e-41 173.7 208 45.2
GSVIVG01000053001 Vitis vinifera HOM05D000001 ORTHO05D009286 2.2e-41 173.7 210 43.8
COL.COLO4_13469 Corchorus olitorius HOM05D000001 ORTHO05D009286 2.9e-41 173.3 229 41.5
Potri.013G021000 Populus trichocarpa HOM05D000001 ORTHO05D009286 2.9e-41 173.3 213 43.2
Hund07071 Selenicereus undatus HOM05D000001 ORTHO05D009286 2.9e-41 173.3 223 43.0
PGSC0003DMG400024697 Solanum tuberosum HOM05D000001 ORTHO05D009286 2.9e-41 173.3 216 42.6
MELO3C004256.2 Cucumis melo HOM05D000001 ORTHO05D009286 3.7e-41 172.9 219 41.6
Lalb_Chr18g0045641 Lupinus albus HOM05D000001 ORTHO05D009286 3.7e-41 172.9 220 44.1
Peaxi162Scf00037g00631 Petunia axillaris HOM05D000001 ORTHO05D009286 4.9e-41 172.6 224 42.0
MSTRG.16965 Avicennia marina HOM05D000001 ORTHO05D009286 6.4e-41 172.2 204 46.1
ClCG02G015790 Citrullus lanatus HOM05D000001 ORTHO05D009286 6.4e-41 172.2 219 41.6
CsaV3_2G005310 Cucumis sativus L. HOM05D000001 ORTHO05D009286 6.4e-41 172.2 219 41.6
MD12G1219200 Malus domestica HOM05D000001 ORTHO05D009286 6.4e-41 172.2 209 44.5
RcHm_v2.0_Chr3g0454761 Rosa chinensis HOM05D000001 ORTHO05D009286 8.3e-41 171.8 213 44.1
Medtr7g113530 Medicago truncatula HOM05D000001 ORTHO05D009286 1.1e-40 171.4 232 42.2
Haze_04195 Corylus avellana HOM05D000001 ORTHO05D009582 1.4e-40 171.0 245 39.6
Sopen01g042810 Solanum pennellii HOM05D000001 ORTHO05D009286 1.4e-40 171.0 216 42.6
Manes.09G167201 Manihot esculenta HOM05D000001 ORTHO05D009286 2.4e-40 170.2 211 42.7
Nitab4.5_0000137g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009286 2.4e-40 170.2 202 45.5
Lj1g0025628 Lotus japonicus HOM05D000001 ORTHO05D009286 3.2e-40 169.9 219 43.4
VMungo0540G1561 Vigna mungo HOM05D000001 ORTHO05D009286 7.0e-40 168.7 215 44.2
Glyma.03G237900 Glycine max HOM05D000001 ORTHO05D009286 9.2e-40 168.3 211 44.1
Sc06g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009286 9.2e-40 168.3 224 42.0
Phvul.006G091900 Phaseolus vulgaris HOM05D000001 ORTHO05D009286 1.6e-39 167.5 231 41.6
arahy.Tifrunner.gnm1.ann1.N2G7N8 Arachis hypogaea HOM05D000001 ORTHO05D009286 2.1e-39 167.2 208 43.3
HanXRQChr03g0071681 Helianthus annuus HOM05D000001 ORTHO05D009286 2.7e-39 166.8 221 40.3
Nitab4.5_0003156g0050 Nicotiana tabacum HOM05D000001 ORTHO05D009286 2.7e-39 166.8 224 42.0
Ca_09356_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009286 3.5e-39 166.4 230 41.7
EL10Ac6g14022 Beta vulgaris HOM05D000001 ORTHO05D009286 1.0e-38 164.9 225 40.0
THA.LOC104821713 Tarenaya hassleriana HOM05D000001 ORTHO05D009286 1.0e-38 164.9 209 43.1
CDE05G2030 Ceratophyllum demersum HOM05D000001 ORTHO05D009286 8.6e-38 161.8 209 40.7
AUR62014152 Chenopodium quinoa HOM05D000001 ORTHO05D009286 8.6e-38 161.8 203 43.3
ECA240G0839 Erigeron canadensis HOM05D000001 ORTHO05D009286 8.6e-38 161.8 221 41.2
ATR0030G028 Amborella trichopoda HOM05D000001 ORTHO05D009286 4.3e-37 159.5 179 48.0
Aqoxy2G03342 Aquilegia oxysepala HOM05D000001 ORTHO05D009286 5.6e-37 159.1 194 42.3
CANSAT78G1766 Cannabis sativa HOM05D000001 ORTHO05D009286 5.6e-37 159.1 216 40.7
Psat3g010960 Pisum sativum HOM05D000001 ORTHO05D009286 9.5e-37 158.3 208 40.4
CANSAT78G0322 Cannabis sativa HOM05D000001 ORTHO05D009286 1.6e-36 157.5 216 40.3
Oeu017485.1 Olea europaea HOM05D000001 ORTHO05D009286 1.6e-36 157.5 204 41.7
SalBow8G4411 Salvia bowleyana HOM05D000001 ORTHO05D009286 2.1e-36 157.1 261 34.5
unitig_747.g21349 Utricularia gibba HOM05D000001 ORTHO05D009286 3.6e-36 156.4 187 43.9
Carub.0003s0462 Capsella rubella HOM05D000001 ORTHO05D009286 4.7e-36 156.0 208 40.9
MCO07G492 Micromonas commoda HOM05D000001 ORTHO05D009286 4.7e-36 156.0 300 36.3
Migut.B01034 Erythranthe guttata HOM05D000001 ORTHO05D009286 1.4e-35 154.5 196 45.4
AT3G05345 Arabidopsis thaliana HOM05D000001 ORTHO05D009286 4.0e-35 152.9 208 39.9
PSO302G0274 Papaver somniferum HOM05D000001 ORTHO05D009286 4.0e-35 152.9 197 41.1
arahy.Tifrunner.gnm1.ann1.LJ09F6 Arachis hypogaea HOM05D000001 ORTHO05D009286 6.8e-35 152.1 237 38.0
PSO170G4485 Papaver somniferum HOM05D000001 ORTHO05D009286 6.8e-35 152.1 197 41.6
CARHR079690 Cardamine hirsuta HOM05D000001 ORTHO05D009286 8.9e-35 151.8 208 40.9
Sabra13G0023400 Salix brachista HOM05D000001 ORTHO05D009286 2.6e-34 150.2 194 41.8
Sp3g04210 Schrenkiella parvula HOM05D000001 ORTHO05D009286 3.4e-34 149.8 208 41.3
SGA_v2.0_scaffold172G38993 Striga asiatica HOM05D000001 ORTHO05D009286 4.4e-34 149.4 214 42.5
BNapus_Darmor_BZH_scaffold_114p00160 Brassica napus HOM05D000001 ORTHO05D009286 7.5e-34 148.7 208 39.9
BraSC132t45509Z Brassica rapa HOM05D000001 ORTHO05D009286 7.5e-34 148.7 208 39.9
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 1.3e-30 137.9 163 41.7
AUR62038496 Chenopodium quinoa HOM05D000001 ORTHO05D009286 1.3e-30 137.9 174 40.8
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.0e-30 136.7 197 39.6
Eucgr.B01873 Eucalyptus grandis HOM05D000001 ORTHO05D009286 2.5e-29 133.7 136 52.9
PGR083G0578 Punica granatum HOM05D000001 ORTHO05D009286 1.2e-28 131.3 224 37.9
FAN03G0753 Fragaria x ananassa HOM05D000001 ORTHO05D009286 4.7e-28 129.4 274 33.6
AL3G15790 Arabidopsis lyrata HOM05D000001 ORTHO05D009286 1.4e-24 117.9 180 36.7
Lsat_1_v5_gn_9_123500 Lactuca sativa HOM05D000001 ORTHO05D009286 3.3e-21 106.7 213 31.9
BcaC05g30155 Brassica carinata HOM05D000001 ORTHO05D009286 9.6e-21 105.1 136 42.6
TPR.G33241 Trifolium pratense HOM05D000001 ORTHO05D009286 2.1e-20 104.0 139 39.6
TPR.G18990 Trifolium pratense HOM05D000001 ORTHO05D009286 1.4e-16 91.3 104 49.0
Lj9C80T2 Lonicera japonica HOM05D000001 ORTHO05D009286 5.4e-16 89.4 114 44.7
Carub.0004s2518 Capsella rubella HOM05D005546 ORTHO05D006458 4.3e-13 79.7 248 28.6
AT2G42750 Arabidopsis thaliana HOM05D005546 ORTHO05D006458 5.6e-13 79.3 235 28.9
CiPaw.03G041900 Carya illinoinensis HOM05D003651 ORTHO05D010159 5.6e-13 79.3 194 31.4
Oeu063468.2 Olea europaea HOM05D003651 ORTHO05D010159 5.6e-13 79.3 158 32.3
COL.COLO4_29085 Corchorus olitorius HOM05D003651 ORTHO05D010159 9.6e-13 78.6 180 32.2
AL4G41330 Arabidopsis lyrata HOM05D005546 ORTHO05D006458 1.3e-12 78.2 248 28.6
BraA05t19321Z Brassica rapa HOM05D005546 ORTHO05D006458 1.3e-12 78.2 229 28.4
Lj7A596T40 Lonicera japonica HOM05D003651 ORTHO05D010159 1.3e-12 78.2 194 30.4
C04p03900 Brassica napus HOM05D005546 ORTHO05D006458 1.6e-12 77.8 229 28.4
Cre02.g104500 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 1.6e-12 77.8 185 31.9
Cfa007392 Carpinus fangiana HOM05D003651 ORTHO05D010159 2.8e-12 77.0 200 28.5
Gohir.A09G028400 Gossypium hirsutum HOM05D003651 ORTHO05D010159 3.6e-12 76.6 162 31.5
BolC4t22026H Brassica oleracea HOM05D005546 ORTHO05D006458 4.8e-12 76.3 229 27.9
A05p03330 Brassica napus HOM05D005546 ORTHO05D006458 6.2e-12 75.9 229 27.9
Ciclev10016190m.g Citrus clementina HOM05D003651 ORTHO05D010159 8.1e-12 75.5 183 31.1
CSS0002352 Camellia sinensis var. sinensis HOM05D003651 ORTHO05D010159 1.1e-11 75.1 193 30.1
CSS0049089 Camellia sinensis var. sinensis HOM05D003651 ORTHO05D010159 1.1e-11 75.1 193 30.1
Sp4g24870 Schrenkiella parvula HOM05D005546 ORTHO05D006458 1.1e-11 75.1 220 28.2
Gorai.006G032300 Gossypium raimondii HOM05D003651 ORTHO05D010159 1.4e-11 74.7 162 31.5
Nn3g16772 Nelumbo nucifera HOM05D003651 ORTHO05D010159 1.4e-11 74.7 183 29.5
Haze_14717 Corylus avellana HOM05D003651 ORTHO05D010159 1.8e-11 74.3 206 28.2
Dinv33462 Davidia involucrata HOM05D003651 ORTHO05D010159 1.8e-11 74.3 193 28.5
vmacro05854 Vaccinium macrocarpon HOM05D003651 ORTHO05D010159 1.8e-11 74.3 193 28.5
DCAR_021297 Daucus carota HOM05D005546 ORTHO05D006458 2.4e-11 73.9 217 25.8
Migut.M00246 Erythranthe guttata HOM05D005546 ORTHO05D006458 2.4e-11 73.9 174 28.7
Thhalv10016894m.g Eutrema salsugineum HOM05D005546 ORTHO05D006458 2.4e-11 73.9 220 28.2
PGR083G1139 Punica granatum HOM05D003651 ORTHO05D010159 2.4e-11 73.9 199 29.1
Thecc.04G015100 Theobroma cacao HOM05D003651 ORTHO05D010159 2.4e-11 73.9 180 31.1
TWI23G0943 Tripterygium wilfordii HOM05D005546 ORTHO05D006458 2.4e-11 73.9 184 29.9
Migut.H00089 Erythranthe guttata HOM05D003651 ORTHO05D010159 3.1e-11 73.6 164 31.1
FAN14G4786 Fragaria x ananassa HOM05D003651 ORTHO05D010159 3.1e-11 73.6 188 29.8
Manes.02G088600 Manihot esculenta HOM05D005546 ORTHO05D006458 3.1e-11 73.6 183 29.0
Sc07g0003190 Simmondsia chinensis HOM05D003651 ORTHO05D010159 3.1e-11 73.6 159 30.8
Gohir.D09G027800 Gossypium hirsutum HOM05D003651 ORTHO05D010159 4.0e-11 73.2 165 31.5
FvH4_6g51170 Fragaria vesca HOM05D003651 ORTHO05D010159 5.3e-11 72.8 188 29.8
FAN09G1009 Fragaria x ananassa HOM05D003651 ORTHO05D010159 6.9e-11 72.4 188 30.3
Manes.17G115100 Manihot esculenta HOM05D003651 ORTHO05D010159 6.9e-11 72.4 166 31.9
Rhsim10G0018400 Rhododendron simsii HOM05D003651 ORTHO05D010159 6.9e-11 72.4 194 29.4
SGA_v2.0_scaffold481G52322 Striga asiatica HOM05D003651 ORTHO05D010159 9.0e-11 72.0 158 32.9
vmacro05460 Vaccinium macrocarpon HOM05D003651 ORTHO05D010159 9.0e-11 72.0 193 28.0
ClCG00G002140 Citrullus lanatus HOM05D003651 ORTHO05D010159 1.2e-10 71.6 169 30.8
ClCG09G019160 Citrullus lanatus HOM05D003651 ORTHO05D010159 1.2e-10 71.6 169 30.8
Aa31LG1G24500 Aethionema arabicum HOM05D005546 ORTHO05D006458 1.5e-10 71.2 218 27.5
Eucgr.B01971 Eucalyptus grandis HOM05D000001 ORTHO05D009286 1.5e-10 71.2 99 44.4
Glyma.12G212100 Glycine max HOM05D005546 ORTHO05D006458 1.5e-10 71.2 186 29.0
Phvul.005G094000 Phaseolus vulgaris HOM05D005546 ORTHO05D006458 1.5e-10 71.2 221 27.6
RcHm_v2.0_Chr2g0172761 Rosa chinensis HOM05D003651 ORTHO05D010159 1.5e-10 71.2 187 29.9
Zm00001eb293310 Zea mays HOM05D005546 ORTHO05D006458 1.5e-10 71.2 239 26.4
Cre07.g320350 Chlamydomonas reinhardtii HOM05D003651 ORTHO05D009121 2.6e-10 70.5 224 26.8
Glyma.13G289600 Glycine max HOM05D005546 ORTHO05D006458 2.6e-10 70.5 175 28.6
TAR374G1749 Trochodendron aralioides HOM05D003651 ORTHO05D010159 2.6e-10 70.5 198 29.3
CARHR137830 Cardamine hirsuta HOM05D005546 ORTHO05D006458 3.4e-10 70.1 230 27.8
Hma1.2p1_1291F.1_g273580 Hydrangea macrophylla HOM05D003651 ORTHO05D010159 3.4e-10 70.1 192 27.1
Sed0025906 Sechium edule HOM05D005546 ORTHO05D006458 3.4e-10 70.1 175 28.0
Glyma.19G063100 Glycine max HOM05D003651 ORTHO05D010159 4.5e-10 69.7 166 30.1
Sed0023427 Sechium edule HOM05D003651 ORTHO05D010159 4.5e-10 69.7 170 29.4
TPR.G20000 Trifolium pratense HOM05D005546 ORTHO05D006458 4.5e-10 69.7 175 29.1
MD17G1030400 Malus domestica HOM05D003651 ORTHO05D010159 5.8e-10 69.3 184 29.3
Pp3c20_22300 Physcomitrium patens HOM05D005546 ORTHO05D006458 7.6e-10 68.9 214 28.5
CANSAT64G0198 Cannabis sativa HOM05D003651 ORTHO05D010159 1.3e-09 68.2 169 30.2
GSVIVG01001994001 Vitis vinifera HOM05D003651 ORTHO05D010159 1.3e-09 68.2 164 28.7
Potri.001G347600 Populus trichocarpa HOM05D003651 ORTHO05D010159 2.2e-09 67.4 166 28.3
CsaV3_2G008280 Cucumis sativus L. HOM05D005546 ORTHO05D006458 2.9e-09 67.0 222 26.6
Peaxi162Scf00700g00533 Petunia axillaris HOM05D003651 ORTHO05D010159 2.9e-09 67.0 164 28.7
QL02p075213 Quercus lobata HOM05D003651 ORTHO05D010159 3.8e-09 66.6 244 25.4
SMO364G0270 Selaginella moellendorffii HOM05D003651 ORTHO05D010159 3.8e-09 66.6 176 31.2
A05p32000 Brassica napus HOM05D000001 ORTHO05D009286 4.9e-09 66.2 90 36.7
BraA05t22031Z Brassica rapa HOM05D000001 ORTHO05D009286 4.9e-09 66.2 90 36.7
Lj1g0015835 Lotus japonicus HOM05D003651 ORTHO05D010159 4.9e-09 66.2 171 29.8
Sabra16G0227100 Salix brachista HOM05D003651 ORTHO05D010159 6.4e-09 65.9 176 26.1
SalBow1G8141 Salvia bowleyana HOM05D003651 ORTHO05D010159 8.4e-09 65.5 217 28.6
CANSAT64G0501 Cannabis sativa HOM05D005546 ORTHO05D006458 1.1e-08 65.1 221 25.3
Cc07_g01880 Coffea canephora HOM05D003651 ORTHO05D010159 1.9e-08 64.3 164 29.3
Ca_01720_v3 Cicer arietinum L. HOM05D005546 ORTHO05D006458 3.2e-08 63.5 172 27.9
ClCG07G002640 Citrullus lanatus HOM05D005546 ORTHO05D006458 3.2e-08 63.5 175 26.9
PRCOL_00005993 Prasinoderma coloniale HOM05D001714 ORTHO05D007597 4.2e-08 63.2 204 29.4
Cpa.g.sc48.55 Carica papaya HOM05D000001 ORTHO05D009286 7.1e-08 62.4 104 36.5
Mapoly0005s0147 Marchantia polymorpha HOM05D005546 ORTHO05D006458 1.6e-07 61.2 214 25.2
BolC4t26098H Brassica oleracea HOM05D005546 ORTHO05D006458 2.1e-07 60.8 137 29.2
QL03p046497 Quercus lobata HOM05D003651 ORTHO05D009121 2.7e-07 60.5 242 25.6
DCAR_023462 Daucus carota HOM05D003651 ORTHO05D009121 3.5e-07 60.1 228 24.6
Pp3c3_32230 Physcomitrium patens HOM05D003651 ORTHO05D010159 6.0e-07 59.3 170 28.2
SMO217G0014 Selaginella moellendorffii HOM05D005546 ORTHO05D006458 7.9e-07 58.9 150 30.0
Aa31LG5G15650 Aethionema arabicum HOM05D000001 ORTHO05D009286 3.0e-06 57.0 57 42.1
PRCOL_00006940 Prasinoderma coloniale HOM05D003651 ORTHO05D009121 3.0e-06 57.0 174 29.9
PGR142G2284 Punica granatum HOM05D003651 ORTHO05D009121 8.7e-06 55.5 175 27.4
SGA_v2.0_scaffold24G10276 Striga asiatica HOM05D003651 ORTHO05D009121 8.7e-06 55.5 183 26.8


User provided reference genes

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