Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.2e-49 199.5 101 100.0
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.2e-20 103.2 91 58.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-19 100.1 91 50.5
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.9e-19 98.6 91 50.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.8e-19 98.2 91 50.5
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.0e-19 97.8 91 49.5
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.0e-19 97.8 91 49.5
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 6.5e-19 97.4 91 52.7
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 8.5e-19 97.1 91 54.9
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.1e-18 96.7 91 48.4
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-18 96.7 91 49.5
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.4e-18 96.3 91 50.5
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.9e-18 95.9 91 51.6
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-18 95.9 91 51.6
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-18 95.9 91 51.6
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.9e-18 95.9 91 51.6
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.9e-18 95.9 91 51.6
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 2.5e-18 95.5 91 50.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 4.2e-18 94.7 92 51.1
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.2e-18 94.7 91 51.6
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 5.5e-18 94.4 91 50.5
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.5e-18 94.4 91 52.7
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.5e-18 94.4 92 47.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 7.2e-18 94.0 91 50.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 7.2e-18 94.0 91 50.5
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 7.2e-18 94.0 91 50.5
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 9.4e-18 93.6 91 50.5
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 9.4e-18 93.6 91 48.4
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 9.4e-18 93.6 91 47.3
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 9.4e-18 93.6 91 48.4
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.4e-18 93.6 91 49.5
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 9.4e-18 93.6 91 50.5
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 9.4e-18 93.6 91 49.5
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-17 93.2 91 50.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-17 93.2 91 50.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-17 93.2 91 50.5
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.2e-17 93.2 91 49.5
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.2e-17 93.2 91 49.5
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.6e-17 92.8 91 47.3
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.6e-17 92.8 91 49.5
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.1e-17 92.4 91 48.4
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.1e-17 92.4 91 48.4
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.1e-17 92.4 91 48.4
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 2.1e-17 92.4 91 50.5
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 2.1e-17 92.4 91 49.5
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.7e-17 92.0 91 50.5
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.7e-17 92.0 91 48.4
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.7e-17 92.0 91 47.3
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.7e-17 92.0 91 47.3
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 2.7e-17 92.0 91 47.3
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.7e-17 92.0 91 47.3
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.7e-17 92.0 91 49.5
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.6e-17 91.7 91 47.3
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.7e-17 91.3 90 47.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.1e-17 90.9 91 48.4
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-17 90.9 91 48.4
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 7.9e-17 90.5 91 48.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 7.9e-17 90.5 91 46.2
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 7.9e-17 90.5 91 50.5
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 7.9e-17 90.5 91 49.5
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.0e-16 90.1 91 47.3
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.4e-16 89.7 91 51.6
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.4e-16 89.7 91 47.3
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.4e-16 89.7 91 49.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.8e-16 89.4 91 46.2
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.8e-16 89.4 91 47.3
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.3e-16 89.0 91 45.1
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.3e-16 89.0 91 46.2
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.3e-16 89.0 91 46.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 3.0e-16 88.6 91 45.1
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.0e-16 88.6 91 45.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 3.0e-16 88.6 91 46.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.0e-16 88.6 91 46.2
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.0e-16 88.6 91 48.4
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 3.9e-16 88.2 93 50.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.9e-16 88.2 91 47.3
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.9e-16 88.2 91 46.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.9e-16 88.2 75 53.3
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 5.1e-16 87.8 91 45.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.1e-16 87.8 91 45.1
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.1e-16 87.8 92 48.9
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.7e-16 87.4 91 46.2
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 6.7e-16 87.4 91 45.1
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 8.8e-16 87.0 92 47.8
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.1e-15 86.7 91 47.3
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-15 86.7 92 47.8
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.1e-15 86.7 92 47.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.1e-15 86.7 91 51.6
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.1e-15 86.7 91 47.3
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.1e-15 86.7 91 45.1
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.5e-15 86.3 91 42.9
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.0e-15 85.9 91 46.2
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.3e-15 85.1 91 46.2
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 3.3e-15 85.1 92 46.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 3.3e-15 85.1 91 44.0
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.4e-15 84.7 92 47.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 4.4e-15 84.7 91 44.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 5.7e-15 84.3 91 45.1
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 5.7e-15 84.3 91 45.1
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 5.7e-15 84.3 91 44.0
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 7.4e-15 84.0 91 44.0
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.3e-14 83.2 92 46.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.3e-14 83.2 92 43.5
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.7e-14 82.8 91 48.4
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.2e-14 82.4 91 44.0
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 2.8e-14 82.0 86 47.7
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.8e-14 82.0 91 41.8
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.7e-14 81.6 91 41.8
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.7e-14 81.6 93 45.2
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 3.7e-14 81.6 91 41.8
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.7e-14 81.6 91 41.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 4.8e-14 81.3 91 40.7
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 6.3e-14 80.9 91 42.9
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 8.2e-14 80.5 91 44.0
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.4e-13 79.7 91 39.6
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.4e-13 79.7 91 39.6
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.8e-13 79.3 91 46.2
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 3.1e-13 78.6 91 44.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 5.3e-13 77.8 91 40.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 7.0e-13 77.4 91 42.9
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 7.0e-13 77.4 91 42.9
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 7.0e-13 77.4 91 44.0
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 7.0e-13 77.4 91 40.7
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.2e-12 76.6 91 42.9
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.0e-12 75.9 91 40.7
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 2.6e-12 75.5 91 38.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 4.5e-12 74.7 91 41.8
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 4.5e-12 74.7 91 44.0
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.8e-11 71.6 94 39.4
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.2e-10 67.4 74 47.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.2e-09 66.6 51 52.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.1e-09 65.9 91 40.7
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.4e-08 63.2 107 38.3
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.3e-08 62.4 74 44.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.7e-08 60.8 74 43.2


User provided reference genes

Program Settings