Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 3.3e-107 391.7 197 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 3.0e-92 342.0 194 84.0
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 2.1e-90 335.9 194 84.0
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 1.4e-89 333.2 193 81.9
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 5.2e-89 331.3 194 81.4
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 8.9e-89 330.5 194 80.9
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 3.4e-88 328.6 194 82.0
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 4.4e-88 328.2 194 80.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 5.8e-88 327.8 194 80.9
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 9.8e-88 327.0 194 79.9
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 9.8e-88 327.0 194 80.9
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.3e-87 326.6 194 80.4
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 1.3e-87 326.6 194 79.4
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.3e-87 326.6 194 80.4
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.7e-87 326.2 194 80.4
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.7e-87 326.2 193 79.3
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.2e-87 325.9 194 79.9
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 2.2e-87 325.9 194 79.9
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 2.2e-87 325.9 194 80.4
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 2.2e-87 325.9 194 80.4
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 2.2e-87 325.9 194 80.4
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 2.9e-87 325.5 194 80.4
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 2.9e-87 325.5 194 80.4
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 3.7e-87 325.1 194 78.9
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 3.7e-87 325.1 194 80.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 3.7e-87 325.1 194 79.9
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.7e-87 325.1 194 80.4
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 3.7e-87 325.1 194 80.4
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 4.9e-87 324.7 194 80.4
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 4.9e-87 324.7 194 79.9
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 4.9e-87 324.7 194 79.9
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 4.9e-87 324.7 194 79.9
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 4.9e-87 324.7 194 78.9
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 6.4e-87 324.3 194 79.4
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.4e-87 324.3 194 79.4
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.4e-87 324.3 194 79.4
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 6.4e-87 324.3 194 79.9
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 6.4e-87 324.3 194 79.4
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.1e-86 323.6 194 80.4
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 1.1e-86 323.6 194 79.4
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.4e-86 323.2 194 79.4
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.4e-86 323.2 194 79.4
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 1.9e-86 322.8 194 79.4
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.9e-86 322.8 194 78.4
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.9e-86 322.8 194 79.4
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.9e-86 322.8 194 78.4
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 1.9e-86 322.8 194 79.4
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 1.9e-86 322.8 194 79.4
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.9e-86 322.8 194 79.4
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 2.4e-86 322.4 194 79.4
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 3.2e-86 322.0 194 78.4
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 4.1e-86 321.6 187 82.9
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 4.1e-86 321.6 193 79.3
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 4.1e-86 321.6 194 78.4
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 4.1e-86 321.6 186 82.8
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 4.1e-86 321.6 194 79.4
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 4.1e-86 321.6 194 78.4
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 7.0e-86 320.9 193 80.3
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 7.0e-86 320.9 193 80.3
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 7.0e-86 320.9 193 80.3
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 9.2e-86 320.5 194 78.4
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 9.2e-86 320.5 194 78.9
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 9.2e-86 320.5 194 78.4
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.2e-85 320.1 194 78.4
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 1.2e-85 320.1 194 78.4
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 1.6e-85 319.7 193 78.8
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 1.6e-85 319.7 193 78.8
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 1.6e-85 319.7 194 78.4
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.6e-85 319.7 194 78.4
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 2.1e-85 319.3 187 81.8
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 2.1e-85 319.3 194 78.4
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.7e-85 318.9 190 79.5
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 2.7e-85 318.9 188 81.4
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 2.7e-85 318.9 193 78.2
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 3.5e-85 318.5 193 78.2
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 3.5e-85 318.5 193 78.2
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 3.5e-85 318.5 193 78.2
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 3.5e-85 318.5 194 78.4
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 4.6e-85 318.2 194 76.8
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 6.0e-85 317.8 193 78.2
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 6.0e-85 317.8 186 81.7
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 7.8e-85 317.4 193 78.2
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 7.8e-85 317.4 194 77.8
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.8e-85 317.4 194 76.8
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.0e-84 317.0 190 79.5
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.0e-84 317.0 194 78.4
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 1.3e-84 316.6 185 81.6
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.7e-84 316.2 185 82.2
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 2.3e-84 315.8 195 77.4
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.3e-84 315.8 194 76.3
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 2.3e-84 315.8 185 81.6
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.3e-84 315.8 185 81.1
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 3.0e-84 315.5 189 79.9
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 3.9e-84 315.1 185 81.1
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 6.6e-84 314.3 186 80.6
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 6.6e-84 314.3 188 79.3
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-83 313.5 194 76.3
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.9e-83 312.8 185 80.5
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.9e-83 312.8 185 80.5
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.9e-83 312.8 185 80.5
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.5e-83 312.4 194 77.8
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.5e-83 312.4 194 76.8
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 3.3e-83 312.0 186 80.1
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 3.3e-83 312.0 186 79.6
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 9.5e-83 310.5 185 80.0
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 9.5e-83 310.5 185 80.0
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 1.2e-82 310.1 186 79.0
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.1e-81 307.0 195 77.4
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 9.9e-80 300.4 218 68.3
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 9.9e-80 300.4 225 68.0
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 2.2e-79 299.3 216 69.0
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 6.4e-79 297.7 194 75.3
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 5.4e-78 294.7 175 80.6
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 6.0e-77 291.2 194 73.2
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.2e-74 283.5 194 72.7
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.0e-72 276.2 193 72.5
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 6.0e-69 264.6 166 77.7
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 1.0e-68 263.8 196 67.9
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.1e-68 261.5 194 68.0
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 1.1e-67 260.4 194 67.5
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 1.3e-66 256.9 194 66.5
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 6.2e-66 254.6 194 65.5
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 8.1e-66 254.2 186 69.4
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 8.1e-66 254.2 186 69.4
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.3e-65 251.5 186 68.8
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 5.3e-65 251.5 150 81.3
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.1e-62 243.8 184 63.0
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 3.2e-62 242.3 140 82.1
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 1.0e-60 237.3 134 83.6
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.7e-52 207.6 178 61.2
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 2.5e-51 206.1 124 79.0
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.1e-50 203.0 127 81.1
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.8e-50 201.8 123 81.3
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 2.2e-47 193.0 184 51.1
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 2.2e-47 193.0 146 68.5
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 6.2e-42 174.9 167 51.5
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 3.2e-38 162.5 187 50.3
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.2e-37 160.6 92 83.7
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.9e-36 155.6 83 90.4
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.7e-36 154.8 123 67.5
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.1e-33 146.0 75 93.3
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.0e-33 144.4 75 92.0
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.1e-29 133.3 78 82.1
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.8e-20 103.6 70 67.1
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 5.1e-20 102.1 58 81.0
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.8e-20 101.3 70 67.1
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 8.5e-15 84.7 68 61.8
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 8.5e-15 84.7 54 70.4
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-14 84.3 109 45.9
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.6e-13 80.5 108 44.4
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 2.7e-13 79.7 104 48.1
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 3.6e-13 79.3 42 90.5
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 4.4e-11 72.4 47 68.1
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.3e-10 68.6 50 64.0
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 8.2e-10 68.2 41 75.6
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 2.4e-09 66.6 38 78.9
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 2.4e-09 66.6 38 78.9
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 3.1e-09 66.2 90 42.2
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 4.1e-09 65.9 39 79.5
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 5.5e-06 55.5 39 71.8


User provided reference genes

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