Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1490.7 857 100.0
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 5.6e-63 246.9 875 25.5
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 5.6e-63 246.9 878 24.0
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 1.6e-62 245.4 864 24.5
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 4.8e-62 243.8 864 24.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 4.8e-62 243.8 876 23.9
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 6.2e-62 243.4 867 24.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 1.4e-61 242.3 874 24.0
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 1.4e-61 242.3 874 23.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 1.8e-61 241.9 873 23.8
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 2.4e-61 241.5 868 23.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 6.9e-61 240.0 870 24.1
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.8e-60 236.9 851 24.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 7.6e-60 236.5 865 23.6
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 7.6e-60 236.5 869 24.4
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 7.6e-60 236.5 875 23.5
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 9.9e-60 236.1 875 23.7
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 1.3e-59 235.7 873 23.7
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 2.2e-59 235.0 866 24.5
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 3.8e-59 234.2 870 23.4
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.8e-59 234.2 870 24.0
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 4.9e-59 233.8 880 23.8
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 4.9e-59 233.8 867 23.6
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 8.4e-59 233.0 861 23.7
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 8.4e-59 233.0 869 24.2
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.1e-58 232.6 871 24.1
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 1.9e-58 231.9 863 24.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 1.9e-58 231.9 847 24.7
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 1.9e-58 231.9 865 23.5
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 1.9e-58 231.9 873 23.6
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 2.4e-58 231.5 865 23.5
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 3.2e-58 231.1 878 23.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 3.2e-58 231.1 867 23.5
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 4.2e-58 230.7 868 23.3
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 4.2e-58 230.7 863 23.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 5.5e-58 230.3 851 23.7
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 5.5e-58 230.3 863 23.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 5.5e-58 230.3 881 23.3
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 7.1e-58 229.9 873 23.4
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 7.1e-58 229.9 879 23.4
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 7.1e-58 229.9 877 23.7
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 9.3e-58 229.6 866 23.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 1.6e-57 228.8 865 23.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 2.1e-57 228.4 877 22.8
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 2.1e-57 228.4 875 23.7
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 2.1e-57 228.4 878 23.2
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 2.7e-57 228.0 880 23.4
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 2.7e-57 228.0 872 22.6
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 3.5e-57 227.6 862 23.1
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 7.9e-57 226.5 861 23.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 7.9e-57 226.5 872 23.5
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 1.0e-56 226.1 878 23.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 1.0e-56 226.1 882 23.6
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 1.3e-56 225.7 858 24.0
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 1.3e-56 225.7 863 22.9
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 1.3e-56 225.7 873 23.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 1.3e-56 225.7 881 23.4
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.0e-56 224.6 879 23.5
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 3.9e-56 224.2 863 23.5
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 5.1e-56 223.8 865 23.2
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 5.1e-56 223.8 878 23.0
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 6.7e-56 223.4 863 23.3
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 1.1e-55 222.6 870 22.9
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 1.1e-55 222.6 867 23.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 1.9e-55 221.9 875 23.4
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 2.5e-55 221.5 846 23.6
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 4.3e-55 220.7 875 22.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 4.3e-55 220.7 879 22.9
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 5.6e-55 220.3 865 23.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 5.6e-55 220.3 846 23.3
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 7.4e-55 219.9 862 23.7
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 9.6e-55 219.5 875 23.3
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 9.6e-55 219.5 877 22.6
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 1.3e-54 219.2 865 23.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.3e-54 219.2 849 23.1
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 1.6e-54 218.8 846 23.5
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 1.6e-54 218.8 854 22.7
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 1.6e-54 218.8 875 22.5
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-54 218.8 870 22.4
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 2.1e-54 218.4 865 23.2
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 2.1e-54 218.4 872 23.2
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 2.8e-54 218.0 876 22.8
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.7e-54 217.6 883 22.8
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 3.7e-54 217.6 860 23.5
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 4.8e-54 217.2 848 23.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 6.2e-54 216.9 878 22.7
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 8.1e-54 216.5 850 23.1
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 8.1e-54 216.5 870 22.3
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 8.1e-54 216.5 870 22.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 1.1e-53 216.1 846 23.5
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 1.4e-53 215.7 878 23.2
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 4.0e-53 214.2 842 23.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 4.0e-53 214.2 862 22.9
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 4.0e-53 214.2 866 23.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 5.3e-53 213.8 865 23.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 5.3e-53 213.8 884 23.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 5.3e-53 213.8 850 22.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 6.9e-53 213.4 840 23.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 6.9e-53 213.4 870 22.1
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 6.9e-53 213.4 867 22.7
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 6.9e-53 213.4 862 23.1
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 6.9e-53 213.4 896 22.2
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 1.2e-52 212.6 850 22.6
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 2.0e-52 211.8 850 22.7
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.0e-52 211.8 851 23.1
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 3.4e-52 211.1 828 24.3
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 4.5e-52 210.7 874 22.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 5.8e-52 210.3 870 23.4
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 1.0e-51 209.5 807 24.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.0e-51 209.5 824 23.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 1.3e-51 209.1 844 23.2
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 3.8e-51 207.6 806 22.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 4.2e-50 204.1 881 22.5
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 5.5e-50 203.8 819 23.2
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 7.1e-50 203.4 893 22.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 8.7e-48 196.4 849 23.1
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 3.1e-45 188.0 891 22.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 5.3e-45 187.2 458 28.4
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 5.3e-45 187.2 569 26.4
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.5e-44 185.7 884 23.6
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 1.4e-42 179.1 848 22.2
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 7.2e-42 176.8 893 22.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.2e-41 176.0 837 22.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.0e-40 171.4 542 25.8
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 2.8e-38 164.9 569 25.5
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.5e-36 159.1 869 21.6
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 4.5e-36 157.5 422 27.7
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 1.2e-33 149.4 800 20.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 3.9e-32 144.4 408 27.5
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 3.9e-32 144.4 408 27.5
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 2.4e-29 135.2 765 20.9
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 9.1e-29 133.3 416 25.5
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.3e-27 129.4 784 19.9
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-25 122.5 152 42.8
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.6e-25 121.3 161 40.4
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.6e-23 115.2 480 26.2
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 8.2e-22 110.2 362 24.9
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.1e-21 107.8 620 19.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.0e-21 107.1 480 24.0
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.0e-20 105.5 435 25.3
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 3.5e-20 104.8 543 21.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.8e-19 101.3 670 19.6
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 6.5e-19 100.5 501 23.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.0e-16 91.7 608 18.6
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.6e-15 88.6 298 24.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.3e-15 88.2 174 28.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.2e-12 79.7 573 18.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.0e-12 79.0 172 27.3
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.3e-11 76.3 57 57.9
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.2e-11 75.5 293 25.6
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.1e-10 73.2 164 25.6
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.5e-10 72.0 172 25.0
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 4.2e-10 71.2 176 23.9
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.8e-06 58.5 74 41.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 4.8e-06 57.8 116 25.9
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 6.3e-06 57.4 161 26.7


User provided reference genes

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