Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 0.0e+00 1758.0 1131 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.2e-124 452.2 1093 36.9
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 4.7e-118 430.3 668 40.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 3.0e-112 411.0 788 36.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 5.1e-112 410.2 932 33.7
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.5e-111 408.7 947 33.2
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.2e-108 399.1 930 31.7
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 3.4e-108 397.5 947 32.8
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 4.4e-108 397.1 926 34.1
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 5.8e-108 396.7 935 32.8
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 7.6e-108 396.4 937 32.7
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.3e-107 395.6 925 32.5
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.3e-107 395.6 936 33.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.9e-107 394.4 937 32.4
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 4.9e-107 393.7 937 33.1
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 8.4e-107 392.9 941 32.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 8.4e-107 392.9 941 32.3
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.2e-106 391.0 905 32.8
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 5.4e-106 390.2 947 32.2
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.1e-106 389.8 908 34.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.2e-105 389.0 641 39.0
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.6e-105 388.7 633 37.8
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 2.7e-105 387.9 937 32.4
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.7e-105 387.9 641 38.8
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.7e-105 387.9 940 31.8
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.5e-105 387.5 937 32.1
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 6.0e-105 386.7 945 32.1
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.8e-105 386.3 635 37.6
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 7.8e-105 386.3 911 32.5
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 7.8e-105 386.3 941 33.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.0e-104 386.0 654 39.0
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.9e-104 384.0 637 38.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.9e-104 384.0 937 32.1
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 5.1e-104 383.6 905 32.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 5.1e-104 383.6 654 37.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 6.6e-104 383.3 937 31.4
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 8.7e-104 382.9 936 32.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.9e-103 381.7 937 31.3
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.5e-103 381.3 907 32.2
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.3e-103 380.9 905 32.8
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 3.3e-103 380.9 937 31.9
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 5.6e-103 380.2 932 31.0
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 7.3e-103 379.8 657 38.4
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.3e-103 379.8 639 37.6
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 9.6e-103 379.4 934 32.5
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 2.1e-102 378.3 931 31.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.1e-102 378.3 943 31.9
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.8e-102 377.9 673 36.8
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.8e-102 377.9 905 34.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 6.2e-102 376.7 937 31.3
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 6.2e-102 376.7 931 32.0
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 6.2e-102 376.7 959 31.7
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 6.2e-102 376.7 910 32.7
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.4e-101 375.6 930 31.6
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.4e-101 375.6 633 37.9
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.4e-101 374.8 657 36.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.1e-101 374.4 940 31.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 5.3e-101 373.6 937 31.6
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 5.3e-101 373.6 933 32.2
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.3e-101 373.6 906 32.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.3e-101 373.6 906 32.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.0e-100 371.7 637 36.6
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.0e-100 371.7 637 36.6
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.0e-100 371.7 649 37.0
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.6e-100 371.3 642 37.2
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.4e-100 370.9 933 31.3
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.6e-100 369.8 905 32.9
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 7.6e-100 369.8 942 31.2
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 9.9e-100 369.4 906 33.0
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 9.9e-100 369.4 940 31.8
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.7e-99 368.6 940 32.3
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 2.9e-99 367.9 922 31.8
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.9e-99 367.9 672 35.7
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 4.9e-99 367.1 908 31.7
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.1e-98 365.9 933 31.3
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.4e-98 364.8 616 37.2
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.2e-98 364.4 936 31.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 4.2e-98 364.0 923 32.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.4e-98 363.6 937 31.7
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 9.3e-98 362.8 934 30.5
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.2e-97 362.5 907 31.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.6e-97 362.1 624 36.7
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.1e-97 361.7 934 30.3
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.1e-97 361.7 934 30.3
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.1e-97 361.7 636 37.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-96 359.0 936 31.8
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.8e-96 358.6 938 30.8
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.3e-96 358.2 666 34.8
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.0e-96 357.8 910 30.9
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 3.0e-96 357.8 606 37.1
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.3e-95 354.4 677 34.9
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 4.8e-94 350.5 595 37.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 8.1e-94 349.7 662 34.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.1e-93 349.4 911 31.6
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.4e-93 349.0 937 31.2
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.8e-92 343.6 934 29.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-90 339.3 932 29.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.6e-89 335.5 947 30.2
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.6e-86 325.5 563 36.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.2e-86 323.6 931 29.4
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.9e-83 314.7 929 29.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 6.7e-80 303.5 1017 28.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.8e-77 295.4 648 31.6
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.9e-74 285.4 482 37.1
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.6e-73 281.2 928 27.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 2.8e-70 271.6 525 37.7
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.1e-65 255.4 707 29.8
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.0e-64 253.1 940 27.9
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 6.3e-62 243.8 443 37.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.8e-54 218.4 785 27.1
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.4e-53 215.3 491 32.2
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.0e-53 213.8 303 40.3
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.6e-49 202.6 351 35.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 5.3e-45 187.6 202 45.5
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.2e-42 177.2 613 30.2
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.7e-41 175.3 509 28.9
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.6e-39 168.7 349 35.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.4e-39 168.3 568 27.6
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 5.9e-36 157.5 318 34.6
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 5.0e-35 154.5 594 35.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.3e-30 137.5 388 27.3
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 8.3e-30 137.1 248 35.9
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 4.1e-29 134.8 157 45.9
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.0e-28 132.5 127 53.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 5.9e-28 131.0 652 24.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.3e-27 129.8 185 39.5
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.4e-24 119.8 449 27.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.0e-20 105.9 103 53.4
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.5e-20 105.1 180 36.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.3e-19 102.4 629 22.9
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 7.0e-13 80.9 78 44.9
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 9.2e-13 80.5 102 44.1
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.1e-12 79.3 99 45.5
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.7e-12 79.0 404 26.2
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 4.6e-12 78.2 115 40.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-11 77.0 89 46.1
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.0e-11 77.0 138 36.2
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 8.6e-11 73.9 159 35.2
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 3.1e-08 65.5 158 31.0
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-07 63.5 204 25.5
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 7.5e-07 60.8 123 32.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.9e-06 58.9 172 29.7
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 6.4e-06 57.8 54 57.4
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 8.3e-06 57.4 116 33.6


User provided reference genes

Program Settings