Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.9e-99 364.8 182 100.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.8e-96 355.9 182 98.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.7e-57 226.5 179 62.6
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 7.0e-56 221.1 173 62.4
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.2e-55 220.3 173 62.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.9e-55 218.0 172 61.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.7e-54 216.5 175 60.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.3e-54 216.1 177 59.9
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.5e-53 213.4 172 61.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.9e-53 213.0 173 61.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 5.6e-53 211.5 173 59.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 7.3e-53 211.1 169 59.2
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.6e-52 209.9 169 59.2
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.6e-52 209.9 169 59.8
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.1e-52 209.5 169 59.2
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.1e-52 209.5 172 60.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.1e-52 209.5 177 59.3
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 2.8e-52 209.1 169 58.6
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.6e-52 208.8 173 59.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.6e-52 208.8 175 58.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 6.2e-52 208.0 171 57.9
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 8.0e-52 207.6 169 59.2
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.0e-52 207.6 169 60.9
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.3e-51 206.1 174 58.6
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 4.0e-51 205.3 175 56.6
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 4.0e-51 205.3 174 57.5
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 4.0e-51 205.3 171 57.9
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 5.2e-51 204.9 180 58.3
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 5.2e-51 204.9 173 59.5
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.2e-51 204.9 172 57.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 6.8e-51 204.5 181 55.8
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.2e-50 203.8 170 56.5
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.5e-50 203.4 173 59.0
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 2.0e-50 203.0 169 59.2
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.6e-50 202.6 169 58.0
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.6e-50 202.6 171 59.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 4.4e-50 201.8 179 55.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 5.8e-50 201.4 158 61.4
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 7.5e-50 201.1 176 59.1
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 7.5e-50 201.1 171 56.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.3e-49 200.3 174 56.9
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.9e-49 199.1 171 57.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 4.9e-49 198.4 169 56.8
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.3e-49 197.6 171 55.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.1e-48 197.2 174 56.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-48 196.4 170 57.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 5.4e-48 194.9 171 56.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.6e-47 193.4 204 49.0
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.6e-47 193.4 163 60.1
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.6e-47 193.4 174 55.7
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.0e-47 193.0 175 54.9
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-47 192.6 169 53.8
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 3.5e-47 192.2 164 59.1
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 4.6e-47 191.8 169 56.2
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 7.8e-47 191.0 173 57.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.0e-46 190.7 185 52.4
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.3e-46 190.3 167 55.7
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.7e-46 189.9 162 58.6
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.3e-46 189.5 179 55.3
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.0e-46 188.3 169 56.8
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 6.6e-46 188.0 174 53.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.9e-45 186.4 167 56.3
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.6e-45 184.9 187 52.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.3e-45 184.5 171 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.2e-44 183.7 157 54.1
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.8e-44 182.6 167 55.7
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.7e-44 181.8 164 54.9
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.4e-43 180.3 239 44.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.2e-43 178.3 173 53.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.8e-43 177.9 163 55.2
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-42 177.2 175 53.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-42 177.2 175 52.6
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.4e-42 175.6 175 52.0
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 4.4e-42 175.3 185 51.9
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 7.5e-42 174.5 181 51.4
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.4e-40 170.2 175 50.3
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 4.1e-40 168.7 135 63.0
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.1e-40 167.9 162 54.3
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 9.2e-40 167.5 186 47.3
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 4.6e-39 165.2 133 60.2
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 7.8e-39 164.5 166 51.2
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.9e-37 159.8 185 48.1
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.5e-37 159.5 137 59.1
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 9.5e-37 157.5 141 56.7
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 9.5e-37 157.5 169 48.5
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-35 152.9 145 49.7
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.2e-35 151.8 185 45.4
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.8e-35 151.4 185 46.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 6.8e-35 151.4 169 46.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 8.9e-35 151.0 184 47.3
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.5e-34 150.2 127 60.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.0e-34 149.8 187 46.0
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.6e-34 149.4 184 46.7
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 7.6e-34 147.9 121 61.2
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 4.9e-33 145.2 126 57.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 6.4e-33 144.8 137 49.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-32 144.1 182 45.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.1e-32 144.1 182 45.1
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.4e-32 143.7 169 46.2
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-32 143.3 187 44.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 4.1e-32 142.1 183 44.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-31 139.8 182 45.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 4.6e-31 138.7 188 44.1
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 6.0e-31 138.3 124 52.4
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.7e-30 136.7 133 54.1
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.3e-30 136.3 181 43.6
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 3.9e-30 135.6 108 59.3
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.9e-29 133.3 127 52.8
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.5e-29 132.9 188 43.1
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.8e-28 129.4 135 48.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.4e-27 127.1 192 40.6
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.8e-27 126.7 180 42.8
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-27 126.7 117 53.0
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 5.2e-27 125.2 180 42.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.9e-25 118.6 152 44.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.1e-24 117.5 173 41.6
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.2e-23 114.0 119 49.6
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 3.5e-23 112.5 117 50.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.6e-23 112.1 118 51.7
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 7.8e-23 111.3 176 36.4
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 7.8e-23 111.3 166 38.0
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.7e-22 110.2 191 34.6
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 2.3e-22 109.8 161 42.2
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-22 109.4 172 37.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 3.9e-22 109.0 159 43.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.5e-21 107.1 172 37.2
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.5e-21 107.1 172 37.2
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.5e-21 107.1 175 40.0
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.9e-21 106.7 165 33.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.5e-21 106.3 180 36.7
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.3e-21 105.5 166 36.1
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.1e-20 103.2 152 38.8
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 9.0e-19 97.8 174 35.1
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.7e-17 93.6 83 59.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 2.7e-15 86.3 127 42.5
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 5.6e-13 78.6 87 46.0
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.8e-12 76.3 175 31.4
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 8.1e-12 74.7 130 34.6
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 6.9e-11 71.6 52 63.5
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 9.0e-11 71.2 54 63.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.8e-10 68.6 52 61.5
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 5.8e-10 68.6 58 55.2
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 9.9e-10 67.8 52 61.5
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.7e-09 67.0 85 42.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 4.9e-09 65.5 76 43.4
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 3.2e-08 62.8 65 49.2
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.6e-07 58.9 52 51.9
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.3e-06 57.4 41 63.4
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 6.7e-06 55.1 137 34.3


User provided reference genes

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