Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 5.3e-175 617.8 377 100.0
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.1e-95 351.7 223 69.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 6.0e-94 348.6 226 68.6
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.0e-93 346.3 220 69.1
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.1e-92 344.4 252 63.5
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 1.4e-90 337.4 222 66.2
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 3.3e-84 316.2 215 61.9
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.6e-83 313.9 215 62.3
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 3.7e-83 312.8 215 60.9
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 6.3e-83 312.0 215 61.4
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 6.3e-83 312.0 215 60.5
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.1e-82 311.2 215 60.5
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 3.1e-82 309.7 215 61.4
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 6.9e-82 308.5 215 60.5
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 6.9e-82 308.5 215 60.0
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 9.0e-82 308.1 215 60.9
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.5e-81 307.4 218 59.2
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.0e-81 307.0 215 59.5
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 2.0e-81 307.0 218 59.6
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.0e-81 307.0 215 60.0
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.0e-81 307.0 216 59.3
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.6e-81 306.6 215 59.5
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 2.6e-81 306.6 215 60.9
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 2.6e-81 306.6 218 59.2
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 3.4e-81 306.2 215 60.0
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 3.4e-81 306.2 215 60.0
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 4.5e-81 305.8 217 59.9
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 4.5e-81 305.8 217 59.9
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.5e-81 305.8 215 60.5
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 4.5e-81 305.8 215 59.5
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 4.5e-81 305.8 215 60.9
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 4.5e-81 305.8 223 59.6
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 5.9e-81 305.4 215 59.5
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 5.9e-81 305.4 214 60.7
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 5.9e-81 305.4 214 59.8
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.7e-81 305.1 215 60.0
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.7e-81 305.1 215 60.0
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 7.7e-81 305.1 215 59.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.0e-80 304.7 215 59.5
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.3e-80 304.3 215 60.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.3e-80 304.3 215 59.5
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.3e-80 304.3 217 59.4
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.7e-80 303.9 215 59.5
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.7e-80 303.9 221 58.4
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.7e-80 303.9 215 60.9
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.7e-80 303.9 222 59.0
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.2e-80 303.5 215 59.5
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.2e-80 303.5 215 60.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.9e-80 303.1 220 59.1
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 3.8e-80 302.8 215 60.0
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 3.8e-80 302.8 215 59.5
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 6.5e-80 302.0 215 59.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 8.5e-80 301.6 215 58.1
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 8.5e-80 301.6 218 59.2
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.1e-79 301.2 215 59.1
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.1e-79 301.2 215 59.1
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.1e-79 301.2 215 59.1
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.1e-79 301.2 215 58.1
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.1e-79 301.2 224 59.4
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.4e-79 300.8 215 57.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.4e-79 300.8 216 59.7
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.5e-79 300.1 215 58.6
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 3.2e-79 299.7 221 58.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.2e-79 299.3 221 58.8
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 4.2e-79 299.3 220 57.3
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 5.5e-79 298.9 221 58.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 7.2e-79 298.5 224 58.5
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 9.4e-79 298.1 215 58.6
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 9.4e-79 298.1 215 57.7
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.2e-78 297.7 220 60.5
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.7e-78 296.6 237 56.1
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 2.7e-78 296.6 215 57.7
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.7e-78 296.6 215 59.5
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.6e-78 296.2 215 57.7
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 3.6e-78 296.2 215 58.1
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 6.1e-78 295.4 215 57.7
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 6.1e-78 295.4 215 58.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 7.9e-78 295.0 220 57.7
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.0e-77 294.7 221 57.5
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.4e-77 294.3 215 56.7
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 5.1e-77 292.4 218 56.4
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 5.1e-77 292.4 218 56.4
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 5.1e-77 292.4 218 56.4
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 6.7e-77 292.0 219 55.7
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 8.8e-77 291.6 218 56.4
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 8.8e-77 291.6 215 57.7
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.1e-76 291.2 218 56.4
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.1e-76 291.2 221 58.4
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.5e-76 290.8 230 52.6
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 4.4e-76 289.3 221 55.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 4.4e-76 289.3 218 56.0
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 5.7e-76 288.9 203 61.6
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.3e-75 287.7 201 59.7
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.7e-75 287.3 218 57.3
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.7e-75 287.3 231 54.5
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.7e-75 287.3 201 60.7
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.2e-75 287.0 218 55.5
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.2e-75 287.0 237 54.9
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.1e-74 284.6 235 54.5
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.1e-74 284.6 218 56.0
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.4e-74 284.3 215 55.3
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.8e-74 283.9 218 54.6
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.8e-74 283.9 221 53.4
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 2.4e-74 283.5 218 54.6
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 5.3e-74 282.3 204 58.8
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 9.1e-74 281.6 218 54.6
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 5.9e-73 278.9 219 57.5
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 2.2e-72 276.9 252 49.6
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 3.8e-72 276.2 215 55.8
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 5.0e-72 275.8 212 54.7
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 5.0e-72 275.8 217 55.8
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.5e-71 273.5 215 54.9
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 4.2e-71 272.7 217 54.4
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 2.1e-70 270.4 221 53.4
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.4e-69 267.7 250 49.2
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 1.8e-69 267.3 240 49.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 5.2e-69 265.8 221 54.3
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.1e-68 264.6 176 62.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.4e-68 261.9 166 65.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.7e-67 259.6 187 58.3
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.6e-62 243.0 213 50.2
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.8e-61 240.7 160 61.9
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.1e-58 231.5 159 60.4
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-57 227.6 238 47.5
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.9e-56 223.4 218 45.9
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 5.0e-56 222.6 251 44.6
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 3.6e-54 216.5 197 48.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 4.0e-53 213.0 160 56.9
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.8e-52 208.4 284 40.1
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.5e-44 184.5 199 46.2
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 9.8e-44 181.8 127 58.3
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.9e-43 179.5 124 58.9
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.0e-41 174.1 134 55.2
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.7e-40 171.0 202 42.1
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 9.5e-39 165.2 125 56.0
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.3e-31 139.8 106 56.6
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.8e-30 137.1 90 61.1
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 5.0e-24 116.3 63 74.6
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.8e-20 102.1 68 60.3
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 8.3e-19 99.0 73 61.6
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.1e-17 94.4 76 55.3
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.1e-17 94.4 81 51.9
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.2e-12 78.6 54 61.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 5.8e-12 76.3 67 49.3
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.9e-11 73.2 64 57.8
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 6.4e-11 72.8 57 54.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 2.7e-09 67.4 43 60.5
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.7e-08 64.7 61 49.2
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 8.6e-08 62.4 79 43.0


User provided reference genes

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