Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.5e-98 362.8 182 100.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.1e-96 355.1 182 98.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 7.0e-56 221.1 179 61.5
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.0e-55 219.5 173 62.4
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 4.6e-55 218.4 173 62.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 3.0e-54 215.7 172 60.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 5.0e-54 214.9 175 60.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 5.0e-54 214.9 177 59.9
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.3e-53 212.2 172 61.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.3e-53 211.8 173 61.3
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.5e-53 210.7 169 59.2
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.6e-52 209.9 173 59.0
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.8e-52 209.1 169 59.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.8e-52 209.1 169 59.2
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.8e-52 209.1 169 59.8
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 4.7e-52 208.4 169 58.6
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.7e-52 208.4 172 60.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 4.7e-52 208.4 177 59.3
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 8.0e-52 207.6 175 58.9
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.0e-51 207.2 173 59.0
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.4e-51 206.8 169 59.2
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.4e-51 206.8 169 60.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.8e-51 206.5 171 57.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 3.1e-51 205.7 171 57.9
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 5.2e-51 204.9 174 58.6
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 8.9e-51 204.1 174 57.5
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.2e-50 203.8 180 58.3
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.2e-50 203.8 175 56.6
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.2e-50 203.8 172 57.0
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.5e-50 203.4 173 59.5
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.5e-50 203.4 173 59.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.6e-50 202.6 181 55.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 4.4e-50 201.8 169 58.0
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 4.4e-50 201.8 171 59.1
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 4.4e-50 201.8 169 59.2
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 5.8e-50 201.4 171 56.7
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 7.5e-50 201.1 170 55.9
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 9.8e-50 200.7 174 56.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-49 200.3 176 59.1
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.7e-49 199.9 159 61.0
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 4.9e-49 198.4 171 57.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 8.3e-49 197.6 169 56.8
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.1e-48 197.2 179 54.7
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.4e-48 196.8 171 55.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.4e-48 196.1 174 56.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.1e-48 195.3 170 57.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.2e-47 193.7 171 56.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.0e-47 193.0 204 49.0
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.5e-47 192.2 163 60.1
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 3.5e-47 192.2 174 55.7
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 4.6e-47 191.8 175 54.9
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 6.0e-47 191.4 164 59.1
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 7.8e-47 191.0 169 53.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.0e-46 190.7 169 56.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.7e-46 189.9 185 52.4
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.3e-46 189.5 167 55.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 3.0e-46 189.1 173 57.2
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.9e-46 188.7 162 58.6
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-45 187.2 169 56.8
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.9e-45 186.4 174 53.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 9.5e-45 184.1 167 55.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.5e-45 184.1 179 54.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 9.5e-45 184.1 187 52.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.1e-44 183.0 167 55.7
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.1e-44 181.0 171 52.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.1e-43 180.6 164 54.9
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.1e-43 179.1 157 52.9
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.1e-43 179.1 239 44.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-42 177.2 173 53.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.0e-42 176.4 163 55.2
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-42 176.0 175 53.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-42 176.0 175 52.6
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.5e-42 174.5 175 52.0
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.7e-41 173.3 185 51.4
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.2e-40 169.1 175 50.3
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.2e-40 169.1 181 50.3
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.1e-39 166.4 186 47.3
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.5e-39 165.6 162 53.7
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.0e-39 164.9 135 62.2
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.7e-38 163.3 166 51.2
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.9e-38 162.2 133 59.4
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.6e-37 158.3 185 48.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.6e-36 156.8 169 48.5
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.8e-36 156.0 137 58.4
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.8e-36 156.0 141 56.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 8.1e-36 154.5 145 50.3
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.5e-34 150.2 185 45.4
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.0e-34 149.8 185 46.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-34 149.8 169 46.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.6e-34 149.4 184 47.3
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.8e-34 148.3 187 46.0
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 7.6e-34 147.9 184 46.7
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.7e-33 146.7 127 59.8
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 8.4e-33 144.4 121 60.3
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.1e-32 144.1 126 57.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-32 143.7 137 49.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.4e-32 142.9 169 46.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.4e-32 142.9 182 45.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.4e-32 142.9 182 45.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 5.4e-32 141.7 187 44.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.2e-31 140.6 183 44.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 6.0e-31 138.3 182 45.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.3e-30 137.1 188 44.1
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.7e-30 136.7 133 53.4
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-30 136.7 124 52.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.1e-30 135.2 181 43.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.3e-29 132.1 127 52.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 4.3e-29 132.1 108 58.3
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 7.3e-29 131.3 188 43.1
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.1e-28 129.8 135 48.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 5.2e-27 125.2 180 42.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 8.9e-27 124.4 192 40.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.5e-26 123.6 180 42.8
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.0e-26 123.2 117 52.1
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.1e-24 117.5 152 44.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.9e-24 116.7 173 41.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 3.5e-23 112.5 119 49.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-22 110.5 118 51.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-22 109.4 117 49.6
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.9e-22 109.0 176 35.8
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.9e-22 109.0 166 37.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 6.6e-22 108.2 191 34.0
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 8.7e-22 107.8 159 43.4
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.5e-21 107.1 172 36.6
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.9e-21 106.7 161 41.6
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 4.3e-21 105.5 165 33.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 5.6e-21 105.1 172 36.6
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.6e-21 105.1 172 36.6
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 5.6e-21 105.1 175 39.4
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.6e-21 105.1 180 36.1
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.3e-20 104.0 166 35.5
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 6.9e-19 98.2 174 35.1
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.2e-18 97.4 152 37.5
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.9e-16 90.1 83 57.8
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 4.2e-16 89.0 127 44.1
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 7.4e-13 78.2 175 32.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.6e-12 75.9 87 44.8
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 6.9e-11 71.6 130 33.8
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 6.9e-11 71.6 52 63.5
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.2e-10 70.9 54 63.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 3.4e-10 69.3 72 47.2
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 4.5e-10 68.9 85 43.5
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.8e-10 68.6 52 61.5
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 9.9e-10 67.8 52 61.5
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 6.4e-09 65.1 65 50.8
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.2e-08 62.8 76 42.1
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.6e-07 58.9 52 51.9
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.8e-06 57.0 41 63.4


User provided reference genes

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