Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 0.0e+00 2363.6 1229 100.0
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.0e-223 780.4 1244 40.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 4.8e-217 759.2 1241 39.8
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 9.4e-213 745.0 1236 39.4
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 9.8e-202 708.4 1230 38.6
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.1e-195 686.8 1232 37.4
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 2.0e-191 674.1 1229 37.6
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 3.9e-190 669.8 1241 36.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 2.5e-189 667.2 1227 37.7
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 7.3e-189 665.6 1232 36.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 1.6e-188 664.5 1227 37.6
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 8.0e-188 662.1 1232 37.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 8.0e-188 662.1 1230 36.7
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 1.1e-187 661.8 1233 36.6
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 2.6e-186 657.1 1223 36.7
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 7.5e-186 655.6 1232 37.0
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 4.9e-185 652.9 1227 36.8
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 6.4e-185 652.5 1229 35.9
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 8.3e-185 652.1 1234 36.1
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 2.4e-184 650.6 1223 36.5
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 2.4e-184 650.6 1228 35.3
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 3.2e-184 650.2 1231 36.1
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 4.1e-184 649.8 1224 36.4
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 4.1e-184 649.8 1228 37.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 4.1e-184 649.8 1232 36.5
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 4.1e-184 649.8 1219 36.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 4.1e-184 649.8 1231 35.8
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 7.1e-184 649.0 1223 36.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 9.2e-184 648.7 1236 35.8
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 1.6e-183 647.9 1224 36.6
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 2.1e-183 647.5 1241 36.4
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 2.1e-183 647.5 1227 36.3
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 2.7e-183 647.1 1240 37.2
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 2.7e-183 647.1 1244 35.9
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 3.5e-183 646.7 1224 36.6
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 6.0e-183 646.0 1241 36.1
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 7.8e-183 645.6 1223 36.5
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 1.3e-182 644.8 1228 36.9
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 2.3e-182 644.0 1222 36.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 3.0e-182 643.7 1234 37.0
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 3.0e-182 643.7 1231 36.0
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 3.9e-182 643.3 1230 35.9
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 1.1e-181 641.7 1231 35.7
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 1.5e-181 641.3 1270 36.9
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 4.3e-181 639.8 1230 36.1
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 7.3e-181 639.0 1199 36.9
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 2.1e-180 637.5 1231 35.0
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 1.1e-179 635.2 1223 35.2
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 1.1e-179 635.2 1227 35.5
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 1.4e-179 634.8 1221 35.5
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 4.0e-179 633.3 1229 35.5
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.2e-179 632.9 1226 35.6
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 8.9e-179 632.1 1218 35.6
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.6e-178 630.6 1226 36.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 5.8e-178 629.4 1221 35.6
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.3e-177 628.2 1226 35.4
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 2.2e-177 627.5 1225 35.1
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 2.9e-177 627.1 1228 35.0
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 2.4e-176 624.0 1222 34.7
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 3.2e-176 623.6 1230 34.7
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 7.1e-176 622.5 1231 34.4
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 7.1e-176 622.5 1230 34.4
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 7.1e-176 622.5 1228 35.1
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 9.2e-176 622.1 1223 34.7
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 9.2e-176 622.1 1234 35.4
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 2.1e-175 620.9 1223 34.8
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.1e-175 620.9 1234 35.3
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 4.6e-175 619.8 1229 34.7
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 6.0e-175 619.4 1226 35.0
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 1.3e-174 618.2 1224 34.8
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 3.9e-174 616.7 1224 34.6
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 1.1e-173 615.1 1234 34.5
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 1.1e-173 615.1 1235 35.2
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 1.9e-173 614.4 1258 36.1
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 5.6e-173 612.8 1236 34.1
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 4.7e-172 609.8 1229 34.6
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 6.2e-172 609.4 1187 36.3
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 5.2e-171 606.3 1221 35.1
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.2e-170 605.1 1130 36.2
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 4.4e-170 603.2 1228 35.3
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 1.1e-168 598.6 1241 33.9
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 1.4e-168 598.2 1230 34.3
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 5.4e-168 596.3 1218 35.4
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 9.3e-168 595.5 1234 34.4
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.6e-167 594.7 1228 35.3
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 1.7e-166 591.3 1228 33.8
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 1.1e-165 588.6 1227 33.8
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 2.5e-165 587.4 1222 33.6
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 9.6e-165 585.5 1228 33.9
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 8.1e-164 582.4 1211 34.0
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.1e-163 582.0 1230 34.2
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.1e-163 582.0 1249 34.8
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 2.4e-163 580.9 1156 36.1
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 5.3e-163 579.7 1221 33.4
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 1.3e-158 565.1 1192 34.4
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 3.6e-156 557.0 1301 33.7
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.4e-155 554.3 1179 34.7
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 2.9e-153 547.4 1093 35.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 4.9e-153 546.6 1225 33.1
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 8.4e-153 545.8 1244 33.1
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 7.9e-151 539.3 1256 33.3
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 5.1e-150 536.6 1313 31.3
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.6e-148 531.6 1241 33.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 1.1e-147 528.9 1223 31.0
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 3.0e-142 510.8 1162 33.5
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 3.0e-142 510.8 1234 32.7
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 3.9e-142 510.4 912 38.7
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 3.5e-135 487.3 1146 32.8
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.7e-134 482.6 1213 32.6
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 1.6e-132 478.4 1363 29.9
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.2e-132 478.0 1231 31.7
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.5e-130 470.3 824 38.5
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.5e-128 464.5 1059 33.4
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.1e-119 434.9 793 36.8
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.4e-110 405.6 1060 30.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 2.4e-107 394.8 787 36.5
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.7e-98 364.8 771 32.2
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.2e-92 345.1 1015 29.4
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 7.0e-91 340.1 556 39.2
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.9e-88 332.0 552 40.2
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 8.0e-87 326.6 581 39.6
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 7.0e-83 313.5 564 39.9
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 9.2e-83 313.2 633 33.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.3e-81 309.3 912 28.7
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 4.0e-78 297.7 391 45.8
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 5.6e-72 277.3 365 46.0
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.6e-71 275.8 929 27.1
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.3e-65 256.1 533 31.9
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 1.9e-59 235.7 870 26.8
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.5e-58 231.5 642 30.8
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 9.6e-56 223.4 832 27.9
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 7.1e-51 207.2 439 31.9
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 3.0e-49 201.8 415 33.7
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.0e-45 189.1 423 33.6
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 3.8e-44 184.9 162 56.2
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.4e-43 182.2 288 39.9
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 5.4e-43 181.0 158 58.9
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.2e-42 179.9 371 32.3
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 2.5e-40 172.2 213 41.8
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.1e-39 169.1 241 39.8
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 6.2e-39 167.5 434 31.1
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 5.8e-37 161.0 389 30.6
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.7e-36 159.5 136 58.8
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 4.6e-34 151.4 129 60.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 1.3e-33 149.8 129 60.5
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 5.1e-33 147.9 129 57.4
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.5e-29 134.8 166 45.2
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 5.1e-25 121.3 195 31.8
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 4.8e-23 114.8 355 30.7
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 4.6e-18 98.2 120 44.2
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.3e-17 95.9 105 43.8
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-16 93.2 92 54.3
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.1e-14 85.1 86 50.0
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.3e-14 84.7 72 52.8
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 1.2e-13 83.6 71 53.5
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-13 83.2 102 44.1
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.5e-13 83.2 111 36.0
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 5.9e-13 81.3 75 54.7
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 3.2e-11 75.5 71 49.3
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.8e-06 59.7 98 35.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 5.3e-06 58.2 47 59.6
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 5.3e-06 58.2 47 59.6
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 9.1e-06 57.4 86 32.6
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 9.1e-06 57.4 94 40.4


User provided reference genes

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