Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30607 Chara braunii HOM05D007550 ORTHO05D009474 3.3e-170 601.7 314 100.0
Dinv10312 Davidia involucrata HOM05D007550 ORTHO05D009474 7.2e-24 115.5 71 71.8
Zm00001eb370450 Zea mays HOM05D007550 ORTHO05D009474 9.4e-24 115.2 115 53.0
QL08p005510 Quercus lobata HOM05D007550 ORTHO05D009474 2.1e-23 114.0 96 57.3
TAR626G1551 Trochodendron aralioides HOM05D007550 ORTHO05D009474 3.6e-23 113.2 103 54.4
GSVIVG01037778001 Vitis vinifera HOM05D007550 ORTHO05D009474 3.6e-23 113.2 71 67.6
Lj1A885G31 Lonicera japonica HOM05D007550 ORTHO05D009474 6.1e-23 112.5 71 69.0
RcHm_v2.0_Chr5g0042631 Rosa chinensis HOM05D007550 ORTHO05D009474 6.1e-23 112.5 87 59.8
Manes.15G063300 Manihot esculenta HOM05D007550 ORTHO05D009474 7.9e-23 112.1 121 53.7
Actinidia39070 Actinidia chinensis HOM05D007550 ORTHO05D009474 1.0e-22 111.7 88 56.8
Nn1g07439 Nelumbo nucifera HOM05D007550 ORTHO05D009474 1.0e-22 111.7 98 53.1
FvH4_3g24050 Fragaria vesca HOM05D007550 ORTHO05D009474 1.8e-22 110.9 87 58.6
FAN11G2859 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.8e-22 110.9 87 58.6
Os01g0762300 Oryza sativa ssp. japonica HOM05D007550 ORTHO05D009474 1.8e-22 110.9 69 68.1
Sc18g0004240 Simmondsia chinensis HOM05D007550 ORTHO05D009474 2.3e-22 110.5 97 54.6
TWI38G1227 Tripterygium wilfordii HOM05D007550 ORTHO05D009474 2.3e-22 110.5 73 67.1
LjContig00272g0022958 Lotus japonicus HOM05D007550 ORTHO05D009474 5.1e-22 109.4 106 57.5
AagrBONN_evm.TU.Sc2ySwM_344.2781 Anthoceros agrestis HOM05D007550 ORTHO05D009474 6.7e-22 109.0 70 68.6
CiPaw.12G135900 Carya illinoinensis HOM05D007550 ORTHO05D009474 6.7e-22 109.0 75 65.3
Peaxi162Scf00955g00219 Petunia axillaris HOM05D007550 ORTHO05D009474 8.8e-22 108.6 69 62.3
CDE06G2160 Ceratophyllum demersum HOM05D007550 ORTHO05D009474 1.1e-21 108.2 93 54.8
Nitab4.5_0000163g0330 Nicotiana tabacum HOM05D007550 ORTHO05D009474 1.1e-21 108.2 89 53.9
Solyc12g015630.2 Solanum lycopersicum HOM05D007550 ORTHO05D009474 1.1e-21 108.2 84 56.0
PGSC0003DMG400029800 Solanum tuberosum HOM05D007550 ORTHO05D009474 1.1e-21 108.2 84 56.0
DCAR_022604 Daucus carota HOM05D007550 ORTHO05D009474 1.5e-21 107.8 82 62.2
Duzib213G0332 Durio zibethinus HOM05D007550 ORTHO05D009474 2.0e-21 107.5 89 57.3
MD11G1204800 Malus domestica HOM05D007550 ORTHO05D009474 2.6e-21 107.1 69 68.1
MSTRG.6984 Avicennia marina HOM05D007550 ORTHO05D009474 3.3e-21 106.7 73 65.8
Atru.chr2.3607 Acer truncatum HOM05D007550 ORTHO05D009474 4.3e-21 106.3 95 52.6
Mapoly0128s0022 Marchantia polymorpha HOM05D007550 ORTHO05D009474 5.7e-21 105.9 97 50.5
A10p12800 Brassica napus HOM05D007550 ORTHO05D009474 7.4e-21 105.5 82 58.5
BraA10t43373Z Brassica rapa HOM05D007550 ORTHO05D009474 7.4e-21 105.5 82 58.5
CAN.G410.43 Capsicum annuum HOM05D007550 ORTHO05D009474 7.4e-21 105.5 84 57.1
Thecc.07G022400 Theobroma cacao HOM05D007550 ORTHO05D009474 7.4e-21 105.5 69 65.2
AL8G31140 Arabidopsis lyrata HOM05D007550 ORTHO05D009474 9.7e-21 105.1 82 56.1
AT5G55570 Arabidopsis thaliana HOM05D007550 ORTHO05D009474 9.7e-21 105.1 82 56.1
Hma1.2p1_0036F.1_g022730 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 1.3e-20 104.8 69 68.1
ATR1149G080 Amborella trichopoda HOM05D007550 ORTHO05D009474 1.7e-20 104.4 136 45.6
CARHR268880 Cardamine hirsuta HOM05D007550 ORTHO05D009474 1.7e-20 104.4 82 56.1
Nitab4.5_0001750g0040 Nicotiana tabacum HOM05D007550 ORTHO05D009474 1.7e-20 104.4 75 60.0
Sabra02G0058600 Salix brachista HOM05D007550 ORTHO05D009474 2.2e-20 104.0 114 47.4
ECA240G1453 Erigeron canadensis HOM05D007550 ORTHO05D009474 2.8e-20 103.6 94 52.1
Gorai.002G096500 Gossypium raimondii HOM05D007550 ORTHO05D009474 2.8e-20 103.6 89 56.2
Medtr5g094600 Medicago truncatula HOM05D007550 ORTHO05D009474 2.8e-20 103.6 71 60.6
FAN16G0277 Fragaria x ananassa HOM05D007550 ORTHO05D009474 3.7e-20 103.2 87 54.0
HPP92_028367 Vanilla planifolia HOM05D007550 ORTHO05D009474 3.7e-20 103.2 108 50.9
Gohir.A01G087300 Gossypium hirsutum HOM05D007550 ORTHO05D009474 4.8e-20 102.8 89 56.2
Aa31LG3G11520 Aethionema arabicum HOM05D007550 ORTHO05D009474 6.3e-20 102.4 82 54.9
BolC9t57498H Brassica oleracea HOM05D007550 ORTHO05D009474 6.3e-20 102.4 82 57.3
C09p46340 Brassica napus HOM05D007550 ORTHO05D009474 8.2e-20 102.1 82 57.3
Lalb_Chr17g0348791 Lupinus albus HOM05D007550 ORTHO05D009474 8.2e-20 102.1 72 65.3
Sopen12g007530 Solanum pennellii HOM05D007550 ORTHO05D009474 8.2e-20 102.1 84 54.8
MELO3C014132.2 Cucumis melo HOM05D007550 ORTHO05D009474 1.8e-19 100.9 71 63.4
Psat2g008720 Pisum sativum HOM05D007550 ORTHO05D009474 1.8e-19 100.9 71 60.6
Sed0001315 Sechium edule HOM05D007550 ORTHO05D009474 2.4e-19 100.5 69 65.2
Thhalv10014968m.g Eutrema salsugineum HOM05D007550 ORTHO05D009474 3.1e-19 100.1 109 50.5
HanXRQChr13g0408011 Helianthus annuus HOM05D007550 ORTHO05D009474 3.1e-19 100.1 69 62.3
Phvul.008G275600 Phaseolus vulgaris HOM05D007550 ORTHO05D009474 3.1e-19 100.1 79 59.5
THA.LOC104817699 Tarenaya hassleriana HOM05D007550 ORTHO05D009474 3.1e-19 100.1 111 45.9
CsaV3_3G004390 Cucumis sativus L. HOM05D007550 ORTHO05D009474 9.1e-19 98.6 69 62.3
Migut.M01677 Erythranthe guttata HOM05D007550 ORTHO05D009474 2.6e-18 97.1 90 50.0
Cc05_g14670 Coffea canephora HOM05D007550 ORTHO05D009474 1.0e-17 95.1 98 45.9
Cre03.g145567 Chlamydomonas reinhardtii HOM05D007550 ORTHO05D009474 2.2e-17 94.0 74 58.1
COL.COLO4_09786 Corchorus olitorius HOM05D007550 ORTHO05D009474 7.2e-16 89.0 101 45.5
Aqoxy4G02213 Aquilegia oxysepala HOM05D007550 ORTHO05D009474 1.4e-14 84.7 56 66.1
arahy.Tifrunner.gnm1.ann1.S0MYI4 Arachis hypogaea HOM05D007550 ORTHO05D009474 1.8e-14 84.3 93 48.4
arahy.Tifrunner.gnm1.ann1.R7ZLS4 Arachis hypogaea HOM05D007550 ORTHO05D009474 2.3e-14 84.0 71 53.5
Oeu005969.1 Olea europaea HOM05D007550 ORTHO05D009474 6.7e-14 82.4 67 58.2
PRCOL_00004706 Prasinoderma coloniale HOM05D007550 ORTHO05D009474 6.7e-14 82.4 156 38.5
BcaB08g35917 Brassica carinata HOM05D007550 ORTHO05D009474 2.0e-13 80.9 82 50.0
Potri.011G085501 Populus trichocarpa HOM05D007550 ORTHO05D009474 2.0e-13 80.9 56 62.5
Ciclev10009869m.g Citrus clementina HOM05D007550 ORTHO05D009474 4.4e-13 79.7 80 51.2
Carub.0008s1594 Capsella rubella HOM05D007550 ORTHO05D009474 7.4e-13 79.0 69 50.7
Cfa020230 Carpinus fangiana HOM05D007550 ORTHO05D009474 7.4e-13 79.0 79 48.1
VMungo0647G1572 Vigna mungo HOM05D007550 ORTHO05D009474 9.7e-13 78.6 93 47.3
FAN25G3253 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.3e-12 78.2 86 46.5
PGR031G0516 Punica granatum HOM05D007550 ORTHO05D009474 1.3e-12 78.2 59 59.3
FAN25G1734 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.7e-12 77.8 57 61.4
FAN21G0016 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.2e-12 77.4 75 50.7
EL10Ac4g07615 Beta vulgaris HOM05D007550 ORTHO05D009474 6.3e-12 75.9 44 75.0
Glyma.14G015900 Glycine max HOM05D007550 ORTHO05D009474 6.3e-12 75.9 78 51.3
ClCG10G004590 Citrullus lanatus HOM05D007550 ORTHO05D009474 1.4e-11 74.7 56 58.9
Pp3c18_5680 Physcomitrium patens HOM05D007550 ORTHO05D009474 1.4e-11 74.7 79 50.6
PSO541G5298 Papaver somniferum HOM05D007550 ORTHO05D009474 4.1e-11 73.2 56 55.4
PSO675G9283 Papaver somniferum HOM05D007550 ORTHO05D009474 4.1e-11 73.2 56 55.4
Gohir.D01G073600 Gossypium hirsutum HOM05D007550 ORTHO05D009474 5.3e-11 72.8 74 50.0
unitig_899.g15275 Utricularia gibba HOM05D007550 ORTHO05D009474 9.1e-11 72.0 59 59.3
CANSAT56G0742 Cannabis sativa HOM05D007550 ORTHO05D009474 5.9e-10 69.3 47 66.0
SGA_v2.0_scaffold168G38530 Striga asiatica HOM05D007550 ORTHO05D009474 8.5e-09 65.5 67 46.3
Hma1.2p1_0036F.1_g022720 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 1.1e-08 65.1 90 43.3


User provided reference genes

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