Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 1.2e-113 413.3 235 100.0
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 8.3e-09 65.1 61 55.7
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 1.1e-08 64.7 58 58.6
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 1.4e-08 64.3 49 55.1
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.9e-08 63.9 56 50.0
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.4e-08 63.5 51 58.8
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 2.4e-08 63.5 61 52.5
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.2e-08 63.2 61 54.1
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 5.4e-08 62.4 46 52.2
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 5.4e-08 62.4 46 52.2
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.4e-08 62.4 51 56.9
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.4e-08 62.4 51 56.9
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 5.4e-08 62.4 50 58.0
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 5.4e-08 62.4 56 48.2
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 7.0e-08 62.0 48 60.4
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 7.0e-08 62.0 44 56.8
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 7.0e-08 62.0 51 58.8
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 9.2e-08 61.6 50 50.0
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 9.2e-08 61.6 56 53.6
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 9.2e-08 61.6 46 52.2
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 9.2e-08 61.6 58 53.4
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 9.2e-08 61.6 46 54.3
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 9.2e-08 61.6 46 54.3
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 9.2e-08 61.6 51 54.9
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 9.2e-08 61.6 46 54.3
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 1.2e-07 61.2 56 48.2
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.2e-07 61.2 57 52.6
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.6e-07 60.8 61 54.1
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.6e-07 60.8 61 54.1
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.6e-07 60.8 57 52.6
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 2.0e-07 60.5 45 55.6
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 2.0e-07 60.5 57 49.1
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 2.0e-07 60.5 51 56.9
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.7e-07 60.1 61 49.2
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 2.7e-07 60.1 41 58.5
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 2.7e-07 60.1 56 50.0
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 2.7e-07 60.1 45 60.0
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 2.7e-07 60.1 53 47.2
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.7e-07 60.1 61 52.5
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 2.7e-07 60.1 58 51.7
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 3.5e-07 59.7 53 45.3
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 3.5e-07 59.7 46 52.2
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 3.5e-07 59.7 51 51.0
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 3.5e-07 59.7 51 51.0
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 3.5e-07 59.7 51 51.0
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 3.5e-07 59.7 56 48.2
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 3.5e-07 59.7 55 52.7
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 3.5e-07 59.7 46 56.5
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 4.6e-07 59.3 43 53.5
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 4.6e-07 59.3 53 47.2
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 4.6e-07 59.3 54 51.9
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 4.6e-07 59.3 45 53.3
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 4.6e-07 59.3 49 49.0
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 4.6e-07 59.3 43 55.8
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 6.0e-07 58.9 49 49.0
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 6.0e-07 58.9 49 49.0
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 6.0e-07 58.9 43 53.5
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 6.0e-07 58.9 46 58.7
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 7.8e-07 58.5 49 46.9
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 7.8e-07 58.5 49 46.9
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 7.8e-07 58.5 49 46.9
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 7.8e-07 58.5 49 46.9
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 7.8e-07 58.5 57 47.4
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 7.8e-07 58.5 55 50.9
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 7.8e-07 58.5 45 55.6
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 7.8e-07 58.5 48 52.1
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 7.8e-07 58.5 52 51.9
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 7.8e-07 58.5 46 47.8
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.0e-06 58.2 47 48.9
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.0e-06 58.2 47 48.9
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.0e-06 58.2 47 48.9
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 1.3e-06 57.8 61 41.0
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 1.3e-06 57.8 36 61.1
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.7e-06 57.4 37 62.2
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.7e-06 57.4 44 50.0
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 2.3e-06 57.0 61 45.9
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 2.3e-06 57.0 60 46.7
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 3.0e-06 56.6 62 40.3
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 3.0e-06 56.6 61 50.8
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 3.9e-06 56.2 53 43.4
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 3.9e-06 56.2 60 46.7
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 5.0e-06 55.8 42 57.1
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 6.6e-06 55.5 49 51.0
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 6.6e-06 55.5 49 51.0
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 6.6e-06 55.5 58 41.4
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 8.6e-06 55.1 53 41.5
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 8.6e-06 55.1 52 48.1


User provided reference genes

Program Settings