Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 1.3e-119 433.0 201 100.0
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 5.3e-81 304.7 201 68.7
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.5e-78 296.6 201 66.2
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.5e-78 295.8 201 65.7
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 6.1e-77 291.2 220 61.4
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.0e-76 290.4 199 65.8
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 2.3e-76 289.3 199 65.8
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.3e-76 289.3 199 65.3
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 3.0e-76 288.9 200 64.5
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 3.0e-76 288.9 199 65.3
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 3.0e-76 288.9 199 65.3
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 6.7e-76 287.7 199 65.3
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 6.7e-76 287.7 199 65.3
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 2.0e-75 286.2 199 64.8
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 2.0e-75 286.2 199 64.8
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 2.6e-75 285.8 199 64.3
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 2.6e-75 285.8 199 65.3
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 4.4e-75 285.0 200 64.0
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 4.4e-75 285.0 200 64.5
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 5.7e-75 284.6 197 65.0
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 5.7e-75 284.6 200 64.0
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.3e-74 283.5 200 63.5
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-74 283.5 199 64.8
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.7e-74 283.1 199 63.8
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.7e-74 283.1 200 63.0
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.7e-74 283.1 200 65.0
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 1.7e-74 283.1 193 65.8
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.7e-74 283.1 199 63.3
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.7e-74 283.1 200 64.0
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 2.2e-74 282.7 200 65.0
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.2e-74 282.7 199 63.8
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 2.2e-74 282.7 199 64.3
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 2.2e-74 282.7 199 64.8
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 2.2e-74 282.7 199 63.8
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.8e-74 282.3 192 65.1
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.8e-74 282.3 199 63.8
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 2.8e-74 282.3 203 63.5
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 2.8e-74 282.3 199 64.3
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 3.7e-74 282.0 199 63.8
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 3.7e-74 282.0 194 65.5
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 3.7e-74 282.0 196 65.8
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 4.8e-74 281.6 199 63.8
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 4.8e-74 281.6 199 63.8
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 4.8e-74 281.6 199 64.3
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 4.8e-74 281.6 197 65.0
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 4.8e-74 281.6 194 64.9
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 6.3e-74 281.2 194 64.9
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 6.3e-74 281.2 199 63.8
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 8.2e-74 280.8 200 63.5
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.4e-73 280.0 199 62.3
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.4e-73 280.0 194 64.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.4e-73 280.0 199 63.3
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 4.1e-73 278.5 197 64.5
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 5.3e-73 278.1 198 64.1
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 5.3e-73 278.1 198 64.1
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 7.0e-73 277.7 201 62.7
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 1.2e-72 276.9 203 62.6
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.6e-72 276.6 199 63.8
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.6e-72 276.6 187 65.2
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.0e-72 276.2 200 63.5
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 2.7e-72 275.8 199 63.3
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 2.7e-72 275.8 194 63.4
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 2.7e-72 275.8 216 60.2
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.5e-72 275.4 204 62.7
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 4.5e-72 275.0 191 63.9
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.3e-71 273.5 199 63.3
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-71 273.1 189 66.1
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 2.2e-71 272.7 199 62.3
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 2.9e-71 272.3 192 64.1
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.9e-71 272.3 199 62.8
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.8e-71 271.9 199 62.8
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 5.0e-71 271.6 220 57.3
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 6.5e-71 271.2 191 62.8
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 6.5e-71 271.2 191 62.8
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 6.5e-71 271.2 192 62.5
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 6.5e-71 271.2 200 62.5
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.5e-71 271.2 189 65.1
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 8.5e-71 270.8 191 62.3
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.1e-70 270.4 194 61.9
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.1e-70 270.4 192 64.6
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.9e-70 269.6 191 62.3
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.9e-70 269.6 191 62.3
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.9e-70 269.6 191 63.4
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.9e-70 269.6 188 66.0
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.9e-70 269.6 191 62.3
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.5e-70 269.2 179 68.2
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 5.5e-70 268.1 223 57.0
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 5.5e-70 268.1 194 63.4
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 3.6e-69 265.4 193 63.2
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.6e-69 265.4 192 60.9
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 4.7e-69 265.0 184 63.6
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 4.7e-69 265.0 184 63.6
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 8.0e-69 264.2 191 61.3
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 2.3e-68 262.7 185 63.8
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 5.2e-68 261.5 178 65.7
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 5.2e-68 261.5 173 67.1
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 5.2e-68 261.5 181 66.3
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 8.8e-68 260.8 192 61.5
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 4.4e-67 258.5 172 66.3
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 9.8e-67 257.3 181 64.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.8e-66 255.8 173 66.5
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 8.3e-66 254.2 165 68.5
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 1.2e-64 250.4 165 66.1
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 5.9e-64 248.1 172 64.5
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 3.3e-62 242.3 166 66.3
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.7e-55 219.9 145 65.5
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.9e-54 216.5 170 59.4
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.9e-54 216.5 170 59.4
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 2.3e-52 209.5 145 62.1
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.2e-51 207.2 133 67.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 8.3e-50 201.1 133 64.7
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.0e-47 194.1 133 63.9
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.0e-47 192.6 137 62.8
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 8.6e-47 191.0 126 65.1
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.1e-41 174.1 142 57.7
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.4e-33 146.4 113 58.4
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 5.1e-31 138.7 207 38.6
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.5e-27 127.1 93 63.4
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 2.2e-26 123.2 89 60.7
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.4e-26 121.7 90 64.4
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 3.2e-25 119.4 192 35.9
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 3.9e-15 85.9 59 67.8
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.9e-14 83.6 70 60.0
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 5.4e-09 65.5 39 71.8
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 7.9e-08 61.6 63 50.8
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.3e-06 56.2 51 51.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 4.3e-06 55.8 64 43.8


User provided reference genes

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