Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.6e-166 589.3 290 100.0
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 8.9e-53 211.5 278 38.5
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.3e-48 197.6 278 36.7
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.5e-47 193.4 278 36.0
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 4.7e-46 189.1 279 38.4
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 6.2e-46 188.7 283 38.2
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.1e-45 186.4 280 36.8
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.2e-45 185.7 280 37.9
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 9.8e-44 181.4 279 36.9
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.7e-43 180.6 280 37.1
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 3.7e-43 179.5 280 35.4
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 4.9e-43 179.1 278 36.3
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 8.3e-43 178.3 279 36.9
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 1.4e-42 177.6 281 36.3
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.9e-42 177.2 279 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.4e-42 176.8 258 37.6
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.2e-42 176.4 279 35.5
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.2e-42 176.4 283 36.4
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 3.2e-42 176.4 283 36.0
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 3.2e-42 176.4 282 36.9
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.1e-42 176.0 285 34.4
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 7.0e-42 175.3 279 36.9
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 7.0e-42 175.3 279 35.1
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 7.0e-42 175.3 281 34.5
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 9.2e-42 174.9 279 35.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 9.2e-42 174.9 281 33.5
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 9.2e-42 174.9 282 34.8
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 9.2e-42 174.9 281 35.9
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 9.2e-42 174.9 280 37.1
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.2e-41 174.5 279 35.1
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.6e-41 174.1 279 34.8
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.7e-41 173.3 278 35.6
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.7e-41 173.3 278 35.6
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 2.7e-41 173.3 279 35.5
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.7e-41 173.3 279 37.6
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 3.5e-41 172.9 283 35.0
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 3.5e-41 172.9 285 34.0
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 4.6e-41 172.6 280 37.1
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 4.6e-41 172.6 279 35.5
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 6.0e-41 172.2 282 37.9
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 6.0e-41 172.2 279 35.1
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 7.8e-41 171.8 280 36.4
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.8e-41 171.8 279 35.8
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 7.8e-41 171.8 283 36.0
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.0e-40 171.4 279 33.3
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.7e-40 170.6 282 34.8
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.0e-40 169.9 279 34.8
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 3.0e-40 169.9 280 34.3
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 3.9e-40 169.5 279 35.1
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 3.9e-40 169.5 283 35.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 5.0e-40 169.1 283 34.6
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.0e-40 169.1 279 34.8
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 6.6e-40 168.7 282 33.3
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 6.6e-40 168.7 278 36.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.1e-39 167.9 285 34.7
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 1.9e-39 167.2 280 36.1
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.9e-39 167.2 280 36.1
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.9e-39 167.2 282 35.1
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.5e-39 166.8 279 35.1
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.5e-39 166.8 279 35.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.5e-39 166.8 291 34.4
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 2.5e-39 166.8 279 33.7
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.5e-39 166.8 284 36.6
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 3.3e-39 166.4 283 33.9
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 5.6e-39 165.6 280 34.3
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 5.6e-39 165.6 280 34.3
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 7.3e-39 165.2 278 34.2
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 7.3e-39 165.2 280 33.9
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.3e-39 165.2 279 34.8
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 9.5e-39 164.9 282 33.3
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 2.1e-38 163.7 279 34.8
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.8e-38 163.3 265 35.5
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 2.8e-38 163.3 282 34.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 3.6e-38 162.9 280 34.6
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 4.7e-38 162.5 281 33.8
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 6.2e-38 162.2 282 33.7
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 1.1e-37 161.4 276 35.9
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.1e-37 161.4 280 33.9
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.1e-37 161.4 279 33.3
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-37 161.0 280 36.1
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.4e-37 161.0 287 34.5
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.8e-37 160.6 282 33.3
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.8e-37 160.6 282 34.0
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.0e-37 159.5 279 34.1
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.0e-37 159.5 283 33.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 5.2e-37 159.1 278 32.4
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 6.8e-37 158.7 282 31.9
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 6.8e-37 158.7 279 32.3
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 6.8e-37 158.7 279 32.3
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 6.8e-37 158.7 279 34.4
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 6.8e-37 158.7 302 32.8
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-36 157.9 280 34.6
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-36 157.5 282 33.3
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.6e-36 156.8 282 33.3
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.4e-36 156.0 280 34.3
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.8e-36 155.6 281 32.0
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 5.8e-36 155.6 282 33.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 5.8e-36 155.6 282 33.0
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 5.8e-36 155.6 281 32.4
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.5e-36 155.2 282 33.0
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 9.8e-36 154.8 283 32.9
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.8e-36 154.8 280 33.9
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 2.2e-35 153.7 282 33.0
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 2.9e-35 153.3 281 32.4
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.9e-35 153.3 295 32.5
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 3.7e-35 152.9 288 32.3
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 4.9e-35 152.5 256 33.2
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.4e-34 151.0 284 32.0
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.4e-34 150.2 284 34.5
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 3.2e-34 149.8 282 31.9
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.2e-34 149.8 285 31.9
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 3.2e-34 149.8 284 31.7
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.6e-33 147.5 278 32.4
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 2.1e-33 147.1 320 30.6
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.5e-33 146.4 278 31.7
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.9e-32 142.9 277 31.8
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 2.1e-30 137.1 210 34.3
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.8e-29 134.0 278 30.6
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.2e-29 132.5 243 32.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.0e-28 130.6 284 29.2
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 3.4e-28 129.8 321 28.3
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 9.9e-28 128.3 239 33.1
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.2e-27 127.1 289 29.1
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.8e-27 126.3 237 32.9
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.2e-26 123.2 277 28.2
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.3e-23 113.2 177 37.3
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.6e-20 103.6 206 32.0
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.4e-20 103.2 164 34.1
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.4e-20 103.2 176 33.5
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 3.5e-17 93.2 210 31.4
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.5e-15 87.0 246 27.2
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 5.3e-13 79.3 293 25.6
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 9.0e-13 78.6 85 42.4
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-09 68.2 74 45.9
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 6.0e-09 65.9 91 40.7
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.9e-08 63.2 83 39.8
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 7.4e-07 58.9 94 38.3
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 9.6e-07 58.5 63 44.4


User provided reference genes

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