Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 0.0e+00 1130.5 791 100.0
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 1.2e-64 252.3 562 38.3
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 2.1e-64 251.5 566 35.2
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 2.0e-62 245.0 563 36.2
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 7.5e-62 243.0 566 35.3
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 2.9e-61 241.1 561 34.4
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 1.1e-60 239.2 558 35.5
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 2.4e-60 238.0 563 34.3
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 3.2e-60 237.7 556 36.9
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 9.2e-60 236.1 578 36.7
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 2.7e-59 234.6 561 36.5
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 2.7e-59 234.6 562 34.3
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 3.5e-59 234.2 561 34.0
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 5.9e-59 233.4 557 34.5
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 7.8e-59 233.0 564 34.6
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 1.0e-58 232.6 559 34.9
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 2.3e-58 231.5 569 32.7
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 2.3e-58 231.5 569 35.1
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 3.9e-58 230.7 563 35.3
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 8.6e-58 229.6 560 33.9
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.1e-57 229.2 560 33.8
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 1.1e-57 229.2 566 34.6
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 1.9e-57 228.4 561 34.0
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 1.9e-57 228.4 567 34.0
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 3.3e-57 227.6 566 33.7
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 4.3e-57 227.3 559 34.0
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 7.3e-57 226.5 563 33.2
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 9.5e-57 226.1 561 34.0
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.6e-56 225.3 563 35.3
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 2.1e-56 224.9 562 34.2
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 2.8e-56 224.6 566 37.6
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 3.6e-56 224.2 563 34.3
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 3.6e-56 224.2 571 32.9
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 4.7e-56 223.8 565 33.5
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 6.2e-56 223.4 559 36.7
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 8.0e-56 223.0 561 33.0
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 8.0e-56 223.0 584 35.3
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 8.0e-56 223.0 571 34.0
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 1.0e-55 222.6 557 34.1
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 1.8e-55 221.9 576 34.4
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 4.0e-55 220.7 554 33.4
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 4.0e-55 220.7 564 36.0
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 5.2e-55 220.3 566 33.2
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 6.8e-55 219.9 564 33.9
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 8.9e-55 219.5 576 36.1
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 1.5e-54 218.8 559 33.1
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 1.5e-54 218.8 575 33.9
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 2.0e-54 218.4 562 34.0
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 2.6e-54 218.0 562 34.0
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 3.4e-54 217.6 561 33.5
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 7.5e-54 216.5 562 33.3
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 1.3e-53 215.7 562 34.0
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 2.2e-53 214.9 571 33.1
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 3.7e-53 214.2 562 33.3
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 8.3e-53 213.0 597 32.7
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 8.3e-53 213.0 543 34.4
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 8.3e-53 213.0 563 33.7
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 1.1e-52 212.6 575 31.3
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.1e-52 212.6 572 33.7
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 3.2e-52 211.1 561 34.9
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 4.1e-52 210.7 565 32.6
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 5.4e-52 210.3 574 33.6
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 5.4e-52 210.3 564 33.0
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 7.0e-52 209.9 556 31.7
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 7.0e-52 209.9 567 32.5
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 1.6e-51 208.8 560 32.5
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 2.7e-51 208.0 561 32.3
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 3.5e-51 207.6 575 32.3
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 4.6e-51 207.2 579 32.3
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 6.0e-51 206.8 561 32.3
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 1.0e-50 206.1 562 32.4
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 1.0e-50 206.1 562 32.4
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 6.6e-50 203.4 563 32.0
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 1.1e-49 202.6 573 33.5
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 1.1e-49 202.6 561 32.1
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 3.3e-49 201.1 570 33.9
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 9.5e-49 199.5 573 34.2
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 2.1e-48 198.4 576 32.5
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 2.1e-48 198.4 571 32.0
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 3.6e-48 197.6 568 33.6
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 6.2e-48 196.8 571 31.2
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 1.8e-47 195.3 562 32.2
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 2.3e-47 194.9 558 31.7
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 4.0e-47 194.1 590 32.7
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 5.8e-46 190.3 464 34.9
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 2.9e-45 188.0 566 32.5
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 8.3e-45 186.4 578 34.6
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 1.9e-44 185.3 578 34.4
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 1.9e-44 185.3 578 31.7
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 2.4e-44 184.9 564 31.4
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 1.2e-43 182.6 572 30.4
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 1.6e-43 182.2 565 34.3
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 2.7e-43 181.4 568 32.0
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 3.5e-43 181.0 561 32.1
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 1.1e-39 169.5 562 31.7
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 6.8e-39 166.8 408 34.6
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 1.5e-38 165.6 369 38.8
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 2.0e-38 165.2 363 38.6
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 3.5e-35 154.5 562 30.2
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 4.7e-32 144.1 237 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 8.9e-31 139.8 363 35.8
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 1.0e-26 126.3 234 38.5
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 3.5e-19 101.3 237 32.5
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 3.6e-16 91.3 356 32.6
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 8.1e-16 90.1 191 40.3
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 9.3e-12 76.6 130 43.8
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.0e-10 73.2 145 40.0
Cre07.g355700 Chlamydomonas reinhardtii HOM05D007019 ORTHO05D008398 3.3e-09 68.2 270 25.2
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 5.3e-07 60.8 55 54.5
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 9.0e-07 60.1 68 48.5
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 1.2e-06 59.7 51 58.8
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 1.2e-06 59.7 55 56.4
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 2.0e-06 58.9 68 47.1
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 2.6e-06 58.5 46 63.0
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.4e-06 58.2 55 52.7
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.4e-06 58.2 55 52.7
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 3.4e-06 58.2 96 42.7
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 3.4e-06 58.2 55 52.7
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 3.4e-06 58.2 50 60.0
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 3.4e-06 58.2 69 47.8
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 4.5e-06 57.8 94 43.6
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 4.5e-06 57.8 94 43.6
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 4.5e-06 57.8 46 63.0
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 4.5e-06 57.8 56 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 5.8e-06 57.4 201 29.9
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 5.8e-06 57.4 49 59.2
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 5.8e-06 57.4 46 60.9
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 5.8e-06 57.4 83 45.8
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 5.8e-06 57.4 83 45.8
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 7.6e-06 57.0 69 46.4
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 7.6e-06 57.0 56 51.8
Nn8g39728 Nelumbo nucifera HOM05D004574 ORTHO05D005612 7.6e-06 57.0 72 44.4
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 7.6e-06 57.0 53 54.7
vmacro21880 Vaccinium macrocarpon HOM05D004574 ORTHO05D005612 7.6e-06 57.0 49 59.2
Atru.chr7.229_Atru.chr7.228 Acer truncatum HOM05D004574 ORTHO05D005612 1.0e-05 56.6 55 54.5
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 1.0e-05 56.6 49 57.1
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.0e-05 56.6 51 54.9
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 1.0e-05 56.6 46 60.9
Phvul.003G175300 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 1.0e-05 56.6 46 58.7


User provided reference genes

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