Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.5e-84 316.2 167 100.0
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.3e-51 206.8 145 77.2
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 2.5e-15 86.3 69 66.7
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 5.7e-12 75.1 157 36.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 5.7e-12 75.1 157 36.3
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 2.2e-11 73.2 72 58.3
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 2.2e-11 73.2 72 58.3
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.2e-11 73.2 72 58.3
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 3.7e-11 72.4 55 69.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 4.8e-11 72.0 55 69.1
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 6.3e-11 71.6 72 55.6
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 6.3e-11 71.6 70 57.1
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.2e-11 71.2 55 65.5
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.1e-10 70.9 77 55.8
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.4e-10 70.5 52 67.3
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.4e-10 70.5 51 68.6
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.4e-10 70.5 63 61.9
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.4e-10 70.5 63 61.9
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.8e-10 70.1 51 68.6
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.8e-10 70.1 72 54.2
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.4e-10 69.7 80 52.5
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.4e-10 69.7 72 54.2
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.4e-10 69.7 55 61.8
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.4e-10 69.7 55 61.8
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.1e-10 69.3 52 65.4
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.1e-10 69.3 52 65.4
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 3.1e-10 69.3 55 65.5
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 3.1e-10 69.3 52 65.4
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 3.1e-10 69.3 55 65.5
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.1e-10 68.9 72 54.2
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.1e-10 68.9 52 65.4
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 4.1e-10 68.9 55 65.5
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.1e-10 68.9 51 68.6
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 4.1e-10 68.9 51 68.6
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 5.3e-10 68.6 72 55.6
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 5.3e-10 68.6 52 67.3
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 5.3e-10 68.6 72 54.2
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 5.3e-10 68.6 75 53.3
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 5.3e-10 68.6 81 51.9
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.3e-10 68.6 51 66.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 5.3e-10 68.6 55 60.0
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 5.3e-10 68.6 72 54.2
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 5.3e-10 68.6 55 61.8
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 7.0e-10 68.2 51 66.7
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 7.0e-10 68.2 76 51.3
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.0e-10 68.2 52 63.5
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.0e-10 68.2 52 63.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 7.0e-10 68.2 80 52.5
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.0e-10 68.2 55 63.6
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.0e-10 68.2 72 52.8
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 7.0e-10 68.2 72 52.8
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 7.0e-10 68.2 72 52.8
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 7.0e-10 68.2 72 52.8
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 9.1e-10 67.8 55 63.6
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 64.7
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 9.1e-10 67.8 68 57.4
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 64.7
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 9.1e-10 67.8 55 61.8
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 9.1e-10 67.8 55 61.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 64.7
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 68.6
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.1e-10 67.8 52 63.5
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 9.1e-10 67.8 69 53.6
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 66.7
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 64.7
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 64.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 9.1e-10 67.8 72 54.2
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 9.1e-10 67.8 51 64.7
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 9.1e-10 67.8 72 54.2
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.2e-09 67.4 79 51.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.2e-09 67.4 72 52.8
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.2e-09 67.4 98 43.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 62.7
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.2e-09 67.4 69 55.1
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 64.7
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 62.7
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.2e-09 67.4 51 62.7
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.6e-09 67.0 69 55.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.6e-09 67.0 51 64.7
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.6e-09 67.0 82 51.2
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.6e-09 67.0 51 64.7
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.6e-09 67.0 51 64.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.6e-09 67.0 75 53.3
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.6e-09 67.0 69 55.1
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.6e-09 67.0 69 55.1
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.6e-09 67.0 51 64.7
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.6e-09 67.0 52 63.5
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.6e-09 67.0 51 66.7
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.6e-09 67.0 55 60.0
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.0e-09 66.6 51 64.7
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.0e-09 66.6 96 49.0
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.0e-09 66.6 51 64.7
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-09 66.6 52 63.5
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.0e-09 66.6 55 60.0
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 2.0e-09 66.6 89 44.9
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 2.0e-09 66.6 75 52.0
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.7e-09 66.2 51 62.7
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.7e-09 66.2 55 58.2
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.7e-09 66.2 52 61.5
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.7e-09 66.2 84 47.6
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.7e-09 66.2 76 50.0
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.5e-09 65.9 72 50.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 3.5e-09 65.9 51 62.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 3.5e-09 65.9 55 60.0
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.5e-09 65.5 51 62.7
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 4.5e-09 65.5 51 60.8
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 4.5e-09 65.5 51 62.7
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 5.9e-09 65.1 75 52.0
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 5.9e-09 65.1 69 52.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.9e-09 65.1 69 53.6
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 7.7e-09 64.7 80 46.2
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 7.7e-09 64.7 69 52.2
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.0e-08 64.3 55 56.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.0e-08 64.3 69 50.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-08 63.9 51 62.7
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.7e-08 63.5 50 62.0
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.7e-08 63.5 50 62.0
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 2.2e-08 63.2 52 59.6
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 2.9e-08 62.8 56 62.5
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 2.9e-08 62.8 129 42.6
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 8.5e-08 61.2 78 52.6
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.2e-06 57.4 44 61.4
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.6e-06 57.0 42 64.3
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 4.7e-06 55.5 40 65.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 6.1e-06 55.1 46 58.7


User provided reference genes

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