Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 0.0e+00 1210.3 605 100.0
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 3.4e-123 446.4 619 42.2
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.4e-113 414.5 625 40.6
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.4e-108 397.1 594 41.9
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.3e-103 381.3 621 38.2
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 6.7e-103 379.0 624 37.7
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 5.3e-100 369.4 631 38.5
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 4.5e-99 366.3 620 37.6
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.2e-98 364.0 623 37.9
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 2.9e-98 363.6 629 36.9
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 3.8e-98 363.2 619 36.3
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.1e-97 361.7 627 38.3
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.4e-97 361.3 623 37.6
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.9e-97 360.9 621 38.3
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.5e-97 360.5 623 37.7
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 3.2e-97 360.1 623 37.6
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 4.2e-97 359.8 630 37.5
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 9.4e-97 358.6 628 37.1
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 9.4e-97 358.6 624 36.2
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 9.4e-97 358.6 627 37.8
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 4.7e-96 356.3 638 37.5
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 7.9e-96 355.5 631 36.5
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 7.9e-96 355.5 630 37.0
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 1.4e-95 354.8 624 36.4
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.4e-95 354.8 627 38.8
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.8e-95 354.4 633 34.6
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 2.3e-95 354.0 623 36.3
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.3e-95 354.0 627 36.7
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.3e-95 354.0 625 37.0
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.3e-95 354.0 623 37.1
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 3.0e-95 353.6 627 36.8
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 3.0e-95 353.6 638 35.9
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 5.1e-95 352.8 628 36.8
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 5.1e-95 352.8 625 37.3
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 8.8e-95 352.1 625 37.1
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 1.1e-94 351.7 630 36.8
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 2.0e-94 350.9 619 36.8
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 7.4e-94 349.0 619 36.3
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 7.4e-94 349.0 626 36.4
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.3e-93 348.2 650 36.6
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 2.8e-93 347.1 620 36.5
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.8e-93 347.1 623 37.4
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 4.8e-93 346.3 624 36.5
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 4.8e-93 346.3 626 37.4
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 4.8e-93 346.3 624 37.0
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 8.2e-93 345.5 693 34.5
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.1e-92 345.1 628 36.6
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 1.1e-92 345.1 638 35.9
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.4e-92 344.7 623 34.7
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.8e-92 344.4 619 36.5
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.8e-92 344.4 625 35.8
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.1e-92 343.6 624 36.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 3.1e-92 343.6 625 35.8
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 4.1e-92 343.2 625 35.5
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 4.1e-92 343.2 626 35.6
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 6.9e-92 342.4 624 36.7
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 6.9e-92 342.4 624 36.7
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 6.9e-92 342.4 659 35.2
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.2e-91 341.7 626 35.9
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.5e-91 341.3 616 36.5
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.0e-91 340.9 623 36.1
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 3.4e-91 340.1 627 36.4
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.4e-91 340.1 626 35.6
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 3.4e-91 340.1 624 34.0
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 7.7e-91 339.0 631 37.2
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.7e-90 337.8 613 36.2
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.7e-90 337.8 627 34.9
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.7e-90 337.8 628 36.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.9e-90 337.0 624 35.6
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 2.9e-90 337.0 623 35.5
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 3.8e-90 336.7 619 34.6
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.8e-90 336.7 629 36.1
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.8e-90 336.7 629 36.1
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 8.5e-90 335.5 627 34.8
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.1e-89 335.1 624 35.6
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 2.5e-89 334.0 624 34.6
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.5e-89 334.0 619 35.2
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.2e-89 333.6 618 36.6
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 3.2e-89 333.6 631 34.5
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 5.5e-89 332.8 597 37.2
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 5.5e-89 332.8 625 36.2
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 7.2e-89 332.4 626 34.3
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.2e-88 331.6 610 36.4
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 2.1e-88 330.9 628 34.9
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 6.1e-88 329.3 616 34.6
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.0e-87 328.6 627 35.9
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.3e-87 327.4 624 35.3
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 3.0e-87 327.0 620 34.4
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 6.7e-87 325.9 639 34.9
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.1e-86 325.1 615 34.6
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 2.0e-86 324.3 613 35.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.3e-85 321.6 622 34.7
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 1.3e-85 321.6 625 34.7
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 4.8e-85 319.7 528 38.6
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.4e-84 318.2 622 34.2
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 3.1e-84 317.0 619 34.6
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 5.3e-84 316.2 624 35.3
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 7.0e-84 315.8 644 34.2
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.2e-83 315.1 613 35.1
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.0e-83 314.3 630 34.3
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.0e-82 312.0 623 34.3
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.7e-82 311.2 628 34.1
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.9e-82 310.5 621 35.1
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 8.5e-82 308.9 623 34.5
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 6.1e-80 302.8 629 34.7
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 6.3e-77 292.7 621 30.9
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.4e-76 291.6 626 33.1
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 5.3e-76 289.7 619 33.6
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.0e-74 285.4 601 32.8
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.5e-70 271.6 578 34.1
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 3.4e-70 270.4 578 34.1
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.8e-68 264.6 646 31.7
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-66 258.8 591 32.3
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 2.3e-66 257.7 468 36.3
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 5.5e-65 253.1 521 35.7
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 2.8e-64 250.8 392 39.5
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 1.1e-60 238.8 519 34.5
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 3.1e-60 237.3 393 38.9
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 5.2e-55 219.9 639 28.0
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.0e-50 205.7 263 44.5
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.5e-41 175.3 338 33.7
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 4.7e-40 170.2 233 41.6
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 8.1e-40 169.5 352 34.4
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 4.9e-37 160.2 351 33.3
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.2e-35 155.6 595 26.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 7.8e-27 126.3 447 26.8
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.0e-26 125.9 486 27.2
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.0e-26 125.9 219 35.2
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.2e-24 119.0 387 27.6
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.1e-24 118.2 135 44.4
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.4e-20 105.5 131 38.9
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.9e-20 105.1 261 31.4
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.1e-19 101.7 137 40.9
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.6e-19 100.5 324 29.3
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 3.3e-17 94.4 131 38.2
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.0e-14 85.1 130 33.1
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.4e-14 84.3 74 54.1
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.6e-11 75.5 90 45.6
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.5e-09 68.2 263 25.5
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 3.4e-06 57.8 92 33.7
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 4.5e-06 57.4 79 36.7
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 7.6e-06 56.6 76 36.8


User provided reference genes

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