Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 6.1e-77 290.8 154 100.0
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-30 136.3 228 39.0
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.5e-27 126.7 159 47.8
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.4e-27 125.6 93 68.8
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.4e-27 125.2 93 67.7
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 5.8e-27 124.8 93 68.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.8e-27 124.8 93 68.8
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 5.8e-27 124.8 93 68.8
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 5.8e-27 124.8 93 71.0
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 7.6e-27 124.4 93 68.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.9e-27 124.0 91 69.2
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.3e-26 123.6 93 67.7
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.3e-26 123.6 93 69.9
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.3e-26 123.6 93 68.8
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.3e-26 123.6 93 69.9
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.3e-26 123.6 93 69.9
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.3e-26 123.6 93 69.9
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.3e-26 123.6 93 69.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.7e-26 123.2 93 71.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.7e-26 123.2 160 48.8
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.7e-26 123.2 93 69.9
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 2.2e-26 122.9 93 68.8
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.2e-26 122.9 159 47.2
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-26 122.9 93 68.8
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.2e-26 122.9 93 69.9
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.9e-26 122.5 93 67.7
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.9e-26 122.5 91 69.2
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 2.9e-26 122.5 93 68.8
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 2.9e-26 122.5 112 61.6
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.9e-26 122.5 112 61.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.8e-26 122.1 93 69.9
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 3.8e-26 122.1 93 67.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 3.8e-26 122.1 93 68.8
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 3.8e-26 122.1 91 67.0
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 3.8e-26 122.1 93 68.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.8e-26 122.1 93 68.8
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 4.9e-26 121.7 93 66.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 4.9e-26 121.7 93 66.7
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 4.9e-26 121.7 261 34.1
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.9e-26 121.7 93 67.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 4.9e-26 121.7 91 69.2
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 68.8
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 66.7
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 66.7
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 67.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 68.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 67.7
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 67.7
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 68.8
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 67.7
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 68.8
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 6.4e-26 121.3 93 66.7
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.4e-26 121.3 91 68.1
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 8.4e-26 120.9 93 66.7
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 8.4e-26 120.9 93 67.7
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 8.4e-26 120.9 93 67.7
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.4e-26 120.9 93 68.8
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.4e-26 120.9 93 68.8
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 8.4e-26 120.9 93 68.8
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.1e-25 120.6 93 66.7
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 67.7
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 66.7
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 66.7
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 66.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.4e-25 120.2 91 67.0
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.4e-25 120.2 91 67.0
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 66.7
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 65.6
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 66.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.4e-25 120.2 93 67.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.9e-25 119.8 91 68.1
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.9e-25 119.8 91 68.1
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.9e-25 119.8 91 64.8
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.9e-25 119.8 93 67.7
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.4e-25 119.4 93 66.7
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.4e-25 119.4 93 66.7
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.4e-25 119.4 93 65.6
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.4e-25 119.4 93 65.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.4e-25 119.4 93 66.7
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.4e-25 119.4 93 65.6
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.4e-25 119.4 90 70.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-25 119.4 93 65.6
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.2e-25 119.0 93 65.6
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 3.2e-25 119.0 93 65.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.2e-25 119.0 93 66.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.2e-25 119.0 93 65.6
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.2e-25 119.0 93 65.6
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 3.2e-25 119.0 93 65.6
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.2e-25 119.0 91 68.1
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 3.2e-25 119.0 93 66.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.2e-25 118.6 93 66.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.2e-25 118.6 93 66.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 4.2e-25 118.6 93 65.6
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 4.2e-25 118.6 93 65.6
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 4.2e-25 118.6 93 65.6
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 5.4e-25 118.2 93 67.7
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.1e-25 117.9 93 66.7
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 7.1e-25 117.9 93 65.6
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 7.1e-25 117.9 93 67.7
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 7.1e-25 117.9 93 64.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 9.3e-25 117.5 93 65.6
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.2e-24 117.1 93 66.7
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-24 117.1 93 64.5
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.2e-24 117.1 93 65.6
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.6e-24 116.7 91 62.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.6e-24 116.7 135 50.4
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.6e-24 116.7 259 31.7
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.1e-24 116.3 93 64.5
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.1e-24 116.3 93 64.5
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.7e-24 115.9 92 66.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.7e-24 115.9 93 63.4
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.5e-24 115.5 93 63.4
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 6.0e-24 114.8 93 65.6
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 3.0e-23 112.5 93 61.3
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 6.6e-23 111.3 91 62.6
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 8.7e-23 110.9 91 62.6
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.1e-22 110.5 93 63.4
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.8e-21 105.9 91 61.5
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.1e-21 104.4 131 49.6
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 9.0e-20 100.9 91 58.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-19 100.5 78 65.4
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.2e-19 100.5 91 56.0
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.7e-18 96.7 76 64.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.7e-18 96.7 76 64.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.7e-18 96.7 76 64.5
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.3e-14 82.4 75 58.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.3e-13 80.5 68 58.8
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.1e-13 79.7 62 66.1
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.1e-13 79.7 93 50.5
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 3.6e-13 79.0 183 31.7
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.5e-11 73.6 105 40.0
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.0e-11 73.2 55 65.5
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 6.4e-10 68.2 74 43.2
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.4e-09 67.0 66 54.5
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.9e-09 66.6 103 35.0
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.9e-09 66.6 113 41.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.6e-08 62.0 43 72.1
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 4.6e-08 62.0 44 70.5
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.6e-08 62.0 44 68.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 5.1e-07 58.5 52 55.8
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 8.7e-07 57.8 43 65.1
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 8.7e-07 57.8 54 59.3
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 4.3e-06 55.5 49 61.2


User provided reference genes

Program Settings