Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 5.3e-81 304.3 153 100.0
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 2.3e-68 262.3 153 88.2
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.2e-36 154.8 137 55.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.7e-34 148.7 137 51.8
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 3.2e-33 145.6 143 48.3
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.7e-21 105.1 143 39.2
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 4.0e-20 102.1 146 35.6
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.4e-19 99.0 132 37.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 5.8e-19 98.2 127 38.6
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 5.8e-19 98.2 132 37.1
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 9.8e-19 97.4 131 35.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.3e-18 97.1 127 37.8
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.7e-18 96.7 136 40.4
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 2.2e-18 96.3 131 35.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.4e-17 93.6 143 34.3
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.4e-17 92.8 127 35.4
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.4e-17 92.8 127 35.4
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.4e-17 92.8 127 35.4
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.4e-17 92.8 143 35.0
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.4e-17 92.8 141 33.3
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 4.1e-17 92.0 127 35.4
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 4.1e-17 92.0 127 35.4
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 4.1e-17 92.0 127 35.4
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 4.1e-17 92.0 127 35.4
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 4.1e-17 92.0 127 39.4
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 5.4e-17 91.7 127 35.4
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 7.1e-17 91.3 146 30.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 7.1e-17 91.3 146 30.8
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 7.1e-17 91.3 146 31.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.2e-16 90.5 133 35.3
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.6e-16 90.1 144 33.3
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.1e-16 89.7 149 34.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 2.7e-16 89.4 135 33.3
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.7e-16 89.4 131 33.6
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 3.5e-16 89.0 144 35.4
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.5e-16 89.0 145 30.3
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 4.6e-16 88.6 153 34.0
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.6e-16 88.6 136 30.9
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 6.0e-16 88.2 130 33.1
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 6.0e-16 88.2 133 33.1
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 6.0e-16 88.2 131 34.4
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 7.8e-16 87.8 147 31.3
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 7.8e-16 87.8 144 29.2
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 7.8e-16 87.8 143 30.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 7.8e-16 87.8 147 30.6
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.0e-15 87.4 143 31.5
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.3e-15 87.0 113 37.2
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.3e-15 87.0 147 30.6
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.3e-15 87.0 146 30.8
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.7e-15 86.7 140 35.7
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 2.3e-15 86.3 144 28.5
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.3e-15 86.3 114 36.8
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.3e-15 86.3 114 36.8
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.0e-15 85.9 135 31.1
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.1e-15 85.1 114 36.0
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 5.1e-15 85.1 130 35.4
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 5.1e-15 85.1 132 32.6
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 6.6e-15 84.7 134 31.3
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 6.6e-15 84.7 140 30.0
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 8.6e-15 84.3 144 32.6
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 8.6e-15 84.3 137 32.8
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.1e-14 84.0 144 30.6
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-14 84.0 129 32.6
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.9e-14 83.2 127 32.3
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.9e-14 83.2 142 33.8
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.9e-14 83.2 133 30.1
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.9e-14 83.2 131 32.1
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.5e-14 82.8 105 36.2
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.5e-14 82.8 140 32.1
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.5e-14 82.8 140 34.3
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 4.3e-14 82.0 142 28.9
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 4.3e-14 82.0 142 29.6
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.6e-14 81.6 142 33.1
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 5.6e-14 81.6 136 32.4
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 7.3e-14 81.3 134 34.3
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 7.3e-14 81.3 131 29.8
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 9.5e-14 80.9 145 32.4
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.2e-13 80.5 133 33.8
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.6e-13 80.1 142 31.0
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.6e-13 80.1 121 33.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.6e-13 80.1 132 29.5
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 2.1e-13 79.7 131 30.5
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.1e-13 79.7 125 30.4
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.8e-13 79.3 132 29.5
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.6e-13 79.0 133 27.1
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 4.7e-13 78.6 139 28.8
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 6.2e-13 78.2 134 33.6
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.1e-12 77.4 134 32.1
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.8e-12 76.6 131 30.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.3e-12 76.3 140 32.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.3e-12 76.3 142 30.3
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 2.3e-12 76.3 135 28.1
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.5e-11 73.6 136 28.7
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.5e-11 73.6 133 25.6
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.4e-11 72.4 106 33.0
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 5.8e-11 71.6 102 33.3
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.9e-10 69.3 134 35.1
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 2.9e-10 69.3 122 36.1
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 6.4e-10 68.2 131 32.1
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.4e-09 67.0 121 33.1
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.4e-09 66.2 129 32.6
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 3.2e-09 65.9 101 35.6
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 4.1e-09 65.5 101 35.6
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 5.4e-09 65.1 121 33.1
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 5.4e-09 65.1 101 35.6
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 2.1e-08 63.2 110 35.5
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 4.6e-08 62.0 100 32.0
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 7.8e-08 61.2 95 34.7
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-06 57.4 95 33.7


User provided reference genes

Program Settings