Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.4e-192 676.0 330 100.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.2e-45 188.0 213 45.1
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 2.9e-44 183.3 139 59.0
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.2e-43 179.5 130 59.2
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.0e-41 172.9 141 53.2
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 4.0e-41 172.9 142 51.4
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.1e-38 164.9 119 57.1
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.1e-38 164.9 119 57.1
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.4e-38 164.5 123 53.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.4e-38 163.7 126 56.3
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.4e-38 163.7 126 56.3
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 5.4e-38 162.5 128 53.1
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 7.0e-38 162.2 128 52.3
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.0e-38 162.2 124 54.8
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 7.0e-38 162.2 124 54.8
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 9.2e-38 161.8 122 55.7
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 9.2e-38 161.8 124 54.8
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 9.2e-38 161.8 126 53.2
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.0e-37 160.6 148 48.0
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.0e-37 160.6 119 54.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.0e-37 160.6 119 55.5
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.7e-37 160.2 119 54.6
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.5e-37 159.8 119 54.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.5e-37 159.8 119 54.6
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 3.5e-37 159.8 126 51.6
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 3.5e-37 159.8 126 51.6
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 4.6e-37 159.5 121 56.2
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 4.6e-37 159.5 126 53.2
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.6e-37 159.5 115 57.4
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.9e-37 159.1 117 55.6
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 5.9e-37 159.1 131 51.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 5.9e-37 159.1 131 51.1
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 5.9e-37 159.1 131 51.1
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 5.9e-37 159.1 126 54.0
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 5.9e-37 159.1 126 53.2
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 7.8e-37 158.7 119 53.8
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 7.8e-37 158.7 119 53.8
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 7.8e-37 158.7 119 56.3
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.0e-36 158.3 122 54.1
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.0e-36 158.3 126 53.2
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.0e-36 158.3 119 54.6
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.0e-36 158.3 119 53.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.0e-36 158.3 119 53.8
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.0e-36 158.3 119 52.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.3e-36 157.9 111 59.5
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.3e-36 157.9 119 52.9
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.7e-36 157.5 126 53.2
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.7e-36 157.5 119 55.5
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 1.7e-36 157.5 126 53.2
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.7e-36 157.5 119 55.5
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.7e-36 157.5 119 52.9
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 2.3e-36 157.1 121 52.1
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 2.3e-36 157.1 119 53.8
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.3e-36 157.1 119 55.5
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.3e-36 157.1 119 53.8
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.9e-36 156.8 119 54.6
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.9e-36 156.8 126 52.4
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.9e-36 156.8 119 53.8
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 5.0e-36 156.0 121 52.1
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.0e-36 156.0 126 53.2
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 5.0e-36 156.0 119 52.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 5.0e-36 156.0 121 52.1
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.0e-36 156.0 122 53.3
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 5.0e-36 156.0 119 58.8
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 6.6e-36 155.6 115 53.0
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.6e-36 155.6 119 54.6
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 6.6e-36 155.6 126 50.8
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 8.6e-36 155.2 126 54.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 8.6e-36 155.2 168 44.0
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 8.6e-36 155.2 119 53.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 8.6e-36 155.2 119 52.9
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 8.6e-36 155.2 119 51.3
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.5e-35 154.5 119 52.9
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.5e-35 154.5 112 57.1
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.5e-35 154.5 119 53.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.9e-35 154.1 119 52.1
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.9e-35 154.1 119 50.4
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.9e-35 154.1 119 52.9
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 3.3e-35 153.3 145 46.9
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.3e-35 153.3 126 52.4
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 4.3e-35 152.9 119 53.8
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 5.6e-35 152.5 154 48.7
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 5.6e-35 152.5 211 40.8
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 7.3e-35 152.1 130 51.5
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.5e-35 151.8 115 52.2
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.2e-34 151.4 126 49.2
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.1e-34 150.6 129 51.2
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.1e-34 150.6 114 56.1
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.8e-34 150.2 122 53.3
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 3.6e-34 149.8 122 51.6
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.7e-34 149.4 121 48.8
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 6.2e-34 149.1 112 56.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 6.2e-34 149.1 118 55.9
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 8.0e-34 148.7 112 54.5
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.0e-33 148.3 121 47.9
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-33 147.9 126 54.0
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.4e-33 147.9 126 50.8
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.8e-33 147.5 129 50.4
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.1e-33 146.7 121 47.1
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.2e-32 144.8 119 49.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.2e-32 144.8 119 48.7
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.4e-32 142.9 162 43.2
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 5.8e-32 142.5 128 53.1
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.8e-32 142.5 141 44.0
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.9e-31 140.2 134 50.7
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 3.7e-31 139.8 128 44.5
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 6.4e-31 139.0 133 46.6
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-30 138.3 132 46.2
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.1e-30 138.3 105 52.4
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.4e-30 136.0 105 52.4
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.6e-29 134.4 104 50.0
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.6e-29 134.4 96 57.3
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 2.0e-29 134.0 105 52.4
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.8e-29 132.1 172 36.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 6.6e-28 129.0 83 63.9
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.5e-27 127.9 158 41.8
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.6e-26 123.2 119 40.3
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.7e-26 122.9 119 40.3
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 6.2e-26 122.5 79 62.0
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.1e-26 122.1 119 40.3
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-25 121.7 119 39.5
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-25 121.7 119 39.5
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.1e-25 121.7 119 40.3
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.1e-25 121.7 146 41.1
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-25 121.3 121 39.7
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-25 121.3 119 39.5
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.8e-25 120.9 119 39.5
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.8e-25 120.9 119 39.5
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.8e-25 120.9 173 34.7
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 6.8e-25 119.0 119 37.8
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.2e-24 118.2 118 41.5
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.5e-24 117.9 88 54.5
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.0e-24 117.5 158 41.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 2.6e-24 117.1 129 41.1
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 6.4e-23 112.5 119 36.1
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 6.4e-23 112.5 119 36.1
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 8.3e-23 112.1 167 33.5
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.3e-23 112.1 119 36.1
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 5.4e-22 109.4 133 40.6
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.6e-21 107.8 87 50.6
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.1e-21 107.5 87 50.6
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.0e-21 105.9 144 38.9
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.3e-20 104.8 88 48.9
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 8.6e-20 102.1 88 47.7
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.1e-18 97.4 124 38.7
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.1e-17 95.1 64 60.9
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 6.4e-15 85.9 79 43.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 7.1e-14 82.4 119 36.1
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.2e-13 81.6 95 38.9
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.1e-13 80.9 63 52.4
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.1e-13 80.9 70 48.6
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.6e-13 79.7 104 37.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.0e-12 78.6 70 50.0
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.1e-12 76.3 66 48.5
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 5.1e-12 76.3 66 48.5
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 5.1e-12 76.3 62 51.6
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.1e-11 75.1 66 48.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.5e-11 73.9 65 46.2
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 5.4e-06 56.2 85 35.3


User provided reference genes

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