Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.4e-111 406.4 216 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.2e-73 280.4 179 79.3
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 5.7e-73 278.1 179 78.2
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.8e-70 267.7 223 67.3
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.7e-69 266.5 150 84.7
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.7e-69 266.5 147 86.4
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.3e-69 266.2 147 85.7
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 2.3e-69 266.2 147 85.7
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 2.3e-69 266.2 147 86.4
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.3e-69 266.2 147 86.4
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 3.0e-69 265.8 162 79.6
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 5.0e-69 265.0 147 85.7
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 5.0e-69 265.0 156 81.4
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 5.0e-69 265.0 157 81.5
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 5.0e-69 265.0 149 84.6
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 6.6e-69 264.6 147 85.7
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 6.6e-69 264.6 147 86.4
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 6.6e-69 264.6 148 85.1
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 6.6e-69 264.6 148 85.1
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 6.6e-69 264.6 147 85.7
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 8.6e-69 264.2 165 77.6
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.1e-68 263.8 151 85.4
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.1e-68 263.8 147 85.7
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.1e-68 263.8 147 85.7
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-68 263.8 150 83.3
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.5e-68 263.5 149 84.6
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.5e-68 263.5 147 85.0
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.5e-68 263.5 147 85.0
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.5e-68 263.5 147 85.0
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.5e-68 263.5 147 85.0
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.5e-68 263.5 154 83.1
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.5e-68 263.5 146 86.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 1.5e-68 263.5 150 84.0
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.5e-68 263.5 150 84.0
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.5e-68 263.5 150 84.0
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.9e-68 263.1 147 85.7
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.9e-68 263.1 209 65.6
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.9e-68 263.1 147 84.4
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.9e-68 263.1 147 85.0
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.9e-68 263.1 185 72.4
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.9e-68 263.1 148 84.5
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 1.9e-68 263.1 147 84.4
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.5e-68 262.7 147 85.0
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 2.5e-68 262.7 147 85.0
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.5e-68 262.7 157 80.3
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.5e-68 262.7 150 82.7
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.5e-68 262.7 150 83.3
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 3.3e-68 262.3 150 83.3
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.3e-68 262.3 150 83.3
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.3e-68 262.3 150 83.3
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.3e-68 262.3 150 83.3
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 4.3e-68 261.9 156 80.1
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 4.3e-68 261.9 186 72.6
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 4.3e-68 261.9 186 72.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 4.3e-68 261.9 147 85.0
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 4.3e-68 261.9 181 71.3
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 5.6e-68 261.5 147 85.0
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 5.6e-68 261.5 148 84.5
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 5.6e-68 261.5 157 80.9
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 5.6e-68 261.5 144 86.1
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 5.6e-68 261.5 182 72.0
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 5.6e-68 261.5 147 84.4
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 5.6e-68 261.5 150 83.3
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.6e-68 261.5 147 85.0
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 7.3e-68 261.2 174 73.6
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 7.3e-68 261.2 157 79.6
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 7.3e-68 261.2 157 79.6
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 7.3e-68 261.2 159 80.5
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 7.3e-68 261.2 147 83.7
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 7.3e-68 261.2 160 80.0
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 9.5e-68 260.8 156 79.5
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 9.5e-68 260.8 156 79.5
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 9.5e-68 260.8 147 84.4
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 9.5e-68 260.8 147 84.4
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-67 260.4 147 84.4
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.2e-67 260.4 148 83.8
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.2e-67 260.4 147 84.4
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.2e-67 260.4 165 77.6
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.2e-67 260.4 150 82.7
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.6e-67 260.0 181 71.3
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.6e-67 260.0 180 71.1
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.6e-67 260.0 170 75.3
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.6e-67 260.0 168 76.8
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 2.1e-67 259.6 157 80.9
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.1e-67 259.6 147 83.7
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 2.1e-67 259.6 144 85.4
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.1e-67 259.6 147 83.7
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 2.1e-67 259.6 182 69.8
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 2.8e-67 259.2 147 83.0
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.8e-67 259.2 147 83.7
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.8e-67 259.2 150 82.7
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.8e-67 259.2 143 86.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.6e-67 258.8 147 83.7
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.6e-67 258.8 150 82.7
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 3.6e-67 258.8 147 83.7
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.6e-67 258.8 157 79.0
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 3.6e-67 258.8 147 84.4
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.6e-67 258.8 169 75.1
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 4.7e-67 258.5 169 74.0
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.2e-67 258.1 224 64.3
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 6.2e-67 258.1 200 66.5
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 8.0e-67 257.7 144 85.4
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.0e-66 257.3 157 79.6
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.0e-66 257.3 223 65.9
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.4e-66 256.9 147 83.0
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.4e-66 256.9 146 84.2
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-66 256.9 157 77.7
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.8e-66 256.5 147 83.0
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.8e-66 256.5 148 81.8
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.8e-66 256.5 146 82.9
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.3e-66 256.1 147 82.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 4.0e-66 255.4 216 63.0
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 4.0e-66 255.4 145 83.4
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 6.8e-66 254.6 157 79.6
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 6.8e-66 254.6 157 78.3
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 6.8e-66 254.6 157 79.6
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 8.9e-66 254.2 147 82.3
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 8.9e-66 254.2 147 82.3
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 8.9e-66 254.2 147 82.3
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 8.9e-66 254.2 156 77.6
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.9e-66 254.2 225 63.6
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.2e-65 253.8 209 65.6
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.2e-65 253.8 180 71.1
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.2e-65 253.8 147 82.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.6e-65 252.7 212 64.2
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 9.8e-65 250.8 146 81.5
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.3e-64 250.4 222 62.6
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.3e-64 247.7 133 88.0
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.3e-64 247.7 133 88.0
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 8.3e-64 247.7 133 88.0
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.9e-63 246.5 133 87.2
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 5.4e-63 245.0 189 67.2
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.7e-62 242.7 159 77.4
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 2.3e-61 239.6 134 85.1
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.8e-58 229.9 200 61.5
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.8e-58 229.9 200 61.5
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.8e-58 229.9 196 62.8
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.5e-57 226.9 125 84.8
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 2.6e-57 226.1 147 74.8
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.4e-57 225.7 119 89.1
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 2.9e-56 222.6 136 77.9
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 5.4e-55 218.4 153 70.6
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 5.4e-55 218.4 115 87.8
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.6e-54 215.3 150 72.7
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.3e-53 213.8 149 70.5
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 3.9e-45 185.7 148 64.2
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.3e-37 160.6 148 58.8
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.1e-36 157.5 147 60.5
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.4e-34 150.6 92 76.1
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.0e-29 132.9 147 51.7
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.8e-27 125.6 75 78.7
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 4.3e-12 75.9 68 58.8
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 2.1e-11 73.6 55 69.1
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 8.2e-11 71.6 68 58.8
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 5.3e-10 68.9 75 54.7


User provided reference genes

Program Settings