Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 4.0e-184 648.3 412 100.0
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.6e-50 203.8 158 64.6
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.7e-49 201.1 206 55.3
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 5.0e-49 199.5 144 66.0
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 5.0e-49 199.5 152 64.5
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.1e-48 198.4 151 60.9
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.5e-48 196.1 144 63.9
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 7.2e-48 195.7 141 64.5
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 7.2e-48 195.7 152 63.8
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 9.3e-48 195.3 141 63.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 9.3e-48 195.3 140 64.3
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.1e-47 194.1 141 63.8
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 2.1e-47 194.1 142 64.1
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.7e-47 193.7 141 63.1
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.7e-47 193.7 143 64.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.7e-47 193.7 141 66.0
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 4.6e-47 193.0 144 62.5
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 4.6e-47 193.0 144 63.2
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.6e-47 193.0 141 63.8
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 4.6e-47 193.0 144 63.9
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 4.6e-47 193.0 144 65.3
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 4.6e-47 193.0 152 61.2
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 4.6e-47 193.0 141 65.2
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 7.9e-47 192.2 144 61.8
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 7.9e-47 192.2 144 61.8
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 7.9e-47 192.2 144 60.4
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 7.9e-47 192.2 141 61.7
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 7.9e-47 192.2 141 63.1
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.0e-46 191.8 144 61.8
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.0e-46 191.8 141 63.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.0e-46 191.8 141 64.5
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.0e-46 191.8 141 63.1
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.0e-46 191.8 141 63.1
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.3e-46 191.4 144 61.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.3e-46 191.4 141 63.8
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.3e-46 191.4 141 63.8
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.3e-46 191.4 141 65.2
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.3e-46 191.4 144 61.8
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.3e-46 191.4 142 63.4
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.8e-46 191.0 144 61.1
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.8e-46 191.0 144 61.8
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.8e-46 191.0 141 63.8
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.8e-46 191.0 141 65.2
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 2.3e-46 190.7 144 61.8
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.3e-46 190.7 144 61.8
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 2.3e-46 190.7 144 61.8
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.3e-46 190.7 141 63.8
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 3.0e-46 190.3 144 61.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.0e-46 190.3 140 65.0
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 3.9e-46 189.9 143 60.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 5.1e-46 189.5 141 62.4
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.1e-46 189.5 141 61.7
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 6.7e-46 189.1 143 61.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 8.7e-46 188.7 143 61.5
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 8.7e-46 188.7 141 61.7
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 8.7e-46 188.7 141 63.1
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.1e-45 188.3 144 60.4
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 1.5e-45 188.0 144 60.4
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.5e-45 188.0 140 60.0
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.5e-45 188.0 141 61.7
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.5e-45 188.0 141 63.1
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.5e-45 188.0 141 63.1
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.9e-45 187.6 144 59.7
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.9e-45 187.6 141 61.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.9e-45 187.6 141 63.1
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.5e-45 187.2 141 61.7
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 3.3e-45 186.8 141 61.7
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 3.3e-45 186.8 143 62.9
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 3.3e-45 186.8 134 66.4
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 4.3e-45 186.4 142 60.6
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 4.3e-45 186.4 142 60.6
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 4.3e-45 186.4 141 61.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 5.7e-45 186.0 141 61.0
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 9.7e-45 185.3 141 59.6
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 9.7e-45 185.3 137 65.0
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 9.7e-45 185.3 144 61.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 9.7e-45 185.3 144 61.1
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.7e-45 185.3 144 61.1
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.3e-44 184.9 141 58.9
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.3e-44 184.9 141 61.7
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.6e-44 184.5 139 61.9
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.6e-44 184.5 158 57.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.6e-44 184.5 140 60.7
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.2e-44 184.1 141 62.4
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.2e-44 184.1 139 61.9
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.2e-44 184.1 139 61.9
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.2e-44 184.1 134 64.9
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.8e-44 183.7 141 62.4
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 2.8e-44 183.7 133 64.7
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 3.7e-44 183.3 135 64.4
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.3e-44 182.6 141 60.3
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.3e-44 182.6 141 60.3
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.1e-43 181.8 134 63.4
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-43 181.8 139 61.9
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-43 181.8 139 61.2
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-43 181.8 139 61.9
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.1e-43 181.8 139 61.9
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.4e-43 181.4 140 60.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.4e-43 181.4 143 61.5
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.8e-43 181.0 151 57.6
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.8e-43 181.0 152 56.6
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.8e-43 181.0 140 59.3
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 2.4e-43 180.6 135 61.5
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.4e-43 180.6 222 45.9
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 3.1e-43 180.3 134 61.2
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 4.1e-43 179.9 139 56.8
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 5.3e-43 179.5 144 58.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.2e-42 178.3 141 58.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.2e-42 178.3 136 61.0
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.2e-42 178.3 141 58.9
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.5e-42 177.9 216 44.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 3.4e-42 176.8 137 60.6
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 4.5e-42 176.4 144 59.7
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.5e-42 176.4 144 58.3
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 4.5e-42 176.4 144 58.3
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.5e-42 176.4 144 58.3
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 7.7e-42 175.6 163 52.8
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.0e-41 175.3 145 60.0
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.7e-41 174.5 145 59.3
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.2e-41 174.1 127 66.1
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.2e-41 174.1 151 53.0
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.9e-41 173.7 151 52.3
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 6.5e-41 172.6 135 61.5
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.5e-41 172.6 127 63.0
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.5e-41 172.2 151 52.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-40 171.8 150 54.7
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-40 171.4 149 57.7
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.2e-40 170.2 141 55.3
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 5.5e-40 169.5 139 57.6
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 2.1e-39 167.5 126 61.9
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 2.7e-39 167.2 133 57.1
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 3.9e-38 163.3 166 48.8
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 3.3e-37 160.2 133 55.6
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 5.3e-35 152.9 144 54.9
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 8.5e-33 145.6 100 68.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.2e-32 142.5 129 54.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.2e-31 141.7 121 56.2
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.7e-31 140.6 137 49.6
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.0e-30 137.1 114 58.8
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 8.8e-30 135.6 97 64.9
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.1e-29 135.2 97 64.9
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.5e-29 134.8 102 60.8
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.8e-27 127.9 97 60.8
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.6e-26 124.8 106 54.7
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.5e-24 118.2 97 57.7
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.0e-22 112.1 163 39.9
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 4.4e-21 106.7 73 69.9
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 9.7e-21 105.5 75 62.7
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-20 105.1 107 50.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-19 102.1 77 61.0
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-17 94.7 73 63.0
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.2e-16 90.5 75 54.7
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.6e-15 87.0 126 42.9
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.1e-15 86.3 71 54.9
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.0e-15 85.9 108 44.4
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 8.0e-15 85.9 72 52.8
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-13 82.0 83 48.2
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-12 78.6 81 46.9
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.8e-11 74.7 77 48.1
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 9.1e-11 72.4 73 47.9
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 4.5e-10 70.1 169 31.4
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.0e-09 68.9 43 72.1
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.7e-09 68.2 70 45.7
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 8.5e-09 65.9 43 67.4
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 3.2e-08 63.9 42 69.0
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 4.2e-08 63.5 42 66.7


User provided reference genes

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