Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 0.0e+00 1251.1 645 100.0
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 9.4e-71 272.3 336 42.9
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.6e-65 255.0 299 42.1
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 2.0e-65 254.6 279 46.2
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 5.9e-65 253.1 281 44.5
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 5.9e-65 253.1 281 44.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 3.8e-64 250.4 297 41.4
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 3.8e-64 250.4 281 44.1
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 8.5e-64 249.2 275 42.5
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 2.5e-63 247.7 281 44.1
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.5e-63 247.7 289 43.6
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 3.2e-63 247.3 277 44.0
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 5.5e-63 246.5 281 43.8
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 9.4e-63 245.7 281 44.5
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.6e-62 245.0 275 43.6
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 2.1e-62 244.6 317 39.7
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 2.7e-62 244.2 281 44.5
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.6e-62 243.8 281 42.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 3.6e-62 243.8 281 42.7
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 4.7e-62 243.4 281 43.8
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 4.7e-62 243.4 283 43.5
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 6.1e-62 243.0 273 44.0
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 6.1e-62 243.0 281 42.7
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 8.0e-62 242.7 275 43.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.0e-61 242.3 289 42.9
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 1.4e-61 241.9 275 42.9
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.4e-61 241.9 273 43.2
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.8e-61 241.5 298 42.3
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.8e-61 241.5 275 41.1
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.8e-61 241.5 281 43.4
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 2.3e-61 241.1 290 44.1
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 2.3e-61 241.1 283 43.5
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 4.0e-61 240.4 295 41.0
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 5.2e-61 240.0 326 39.9
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 6.8e-61 239.6 299 40.5
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 6.8e-61 239.6 275 42.9
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 8.8e-61 239.2 309 41.4
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.2e-60 238.8 281 42.7
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.5e-60 238.4 299 40.1
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.5e-60 238.4 281 41.3
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 1.5e-60 238.4 275 42.9
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.5e-60 238.4 297 41.1
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.5e-60 238.4 297 42.8
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 1.5e-60 238.4 281 43.1
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 2.0e-60 238.0 294 41.2
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 2.6e-60 237.7 281 44.5
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 3.4e-60 237.3 281 43.4
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.4e-60 236.9 275 42.2
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 5.7e-60 236.5 282 43.3
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 7.5e-60 236.1 275 42.5
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 9.8e-60 235.7 283 41.7
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 9.8e-60 235.7 292 41.4
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.3e-59 235.3 283 41.7
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 2.2e-59 234.6 281 43.8
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 2.2e-59 234.6 279 43.0
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.2e-59 234.6 294 42.9
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 2.8e-59 234.2 283 41.7
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.8e-59 234.2 283 41.7
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 2.8e-59 234.2 292 41.4
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 2.8e-59 234.2 283 42.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 3.7e-59 233.8 275 42.5
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 3.7e-59 233.8 281 40.2
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 4.8e-59 233.4 299 40.5
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 4.8e-59 233.4 282 41.8
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 6.3e-59 233.0 283 41.0
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 8.3e-59 232.6 267 43.4
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 1.1e-58 232.3 283 41.3
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.4e-58 231.9 278 41.7
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.4e-58 231.1 304 41.8
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 3.1e-58 230.7 283 41.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.2e-57 228.8 281 40.2
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.2e-57 228.8 281 41.6
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 2.0e-57 228.0 281 40.9
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 4.5e-57 226.9 283 41.3
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.7e-56 224.9 307 39.7
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 5.0e-56 223.4 281 40.6
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.5e-55 221.9 271 44.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.3e-55 220.7 260 43.1
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 5.5e-55 219.9 316 38.3
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.6e-54 218.4 308 38.3
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 2.1e-54 218.0 281 40.9
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.8e-54 217.6 260 42.7
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.1e-54 216.5 323 37.8
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 8.0e-54 216.1 272 41.9
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.0e-53 215.7 281 40.9
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 4.0e-53 213.8 275 41.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 6.8e-53 213.0 258 41.5
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 6.8e-53 213.0 275 41.1
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 6.8e-53 213.0 275 41.1
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.9e-53 212.6 255 45.1
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.3e-51 208.8 243 45.3
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.7e-51 208.4 275 40.4
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.9e-51 206.8 296 38.2
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 3.1e-50 204.1 281 38.8
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 9.2e-50 202.6 297 38.0
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.2e-49 202.2 279 39.4
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.0e-48 199.1 279 38.4
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.0e-48 199.1 270 38.9
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 6.6e-48 196.4 292 39.7
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.1e-47 195.7 297 36.4
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.1e-47 195.7 294 36.4
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 2.5e-47 194.5 283 38.2
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-46 192.2 315 34.9
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 3.6e-46 190.7 279 35.5
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.0e-45 189.1 290 36.9
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 5.8e-44 183.3 234 39.7
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 8.3e-43 179.5 231 41.6
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 8.3e-43 179.5 295 35.9
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-42 179.1 216 43.1
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.3e-40 172.2 291 32.6
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 2.3e-40 171.4 222 40.5
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.2e-38 165.6 188 46.3
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 2.1e-38 164.9 185 47.0
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 8.0e-38 162.9 232 37.1
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.7e-35 155.2 314 31.8
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 4.1e-34 150.6 198 38.9
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.3e-31 141.0 291 30.6
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.6e-31 140.2 182 41.2
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.6e-30 138.7 135 51.1
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.3e-29 134.8 183 37.7
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 8.9e-29 132.9 182 39.0
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 6.4e-27 126.7 124 50.0
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.3e-24 119.0 117 45.3
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.9e-23 115.2 137 38.0
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 6.2e-22 110.2 111 49.5
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.3e-19 102.4 177 36.2
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 3.9e-16 90.9 87 40.2
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.9e-16 90.9 105 42.9
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 8.7e-16 89.7 85 40.0
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.5e-15 88.2 88 50.0
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.6e-15 87.0 89 41.6
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.8e-14 84.7 88 44.3
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 8.1e-14 83.2 84 38.1
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.4e-13 81.6 84 41.7
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.1e-13 81.3 82 42.7
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 9.9e-12 76.3 97 44.3
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.4e-10 72.4 97 41.2
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 5.1e-08 63.9 60 51.7


User provided reference genes

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