Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 9.5e-48 193.0 84 100.0
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-15 85.5 50 70.0
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-15 85.5 50 70.0
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.1e-15 85.5 50 70.0
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 2.6e-13 78.6 45 64.4
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 2.6e-13 78.6 45 64.4
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 3.4e-13 78.2 47 61.7
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 5.8e-13 77.4 49 59.2
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.8e-13 77.4 47 59.6
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 5.8e-13 77.4 47 61.7
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.3e-12 76.3 54 55.6
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.3e-12 76.3 45 62.2
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.7e-12 75.9 54 55.6
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.9e-12 75.1 49 55.1
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 3.8e-12 74.7 51 54.9
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 3.8e-12 74.7 47 57.4
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 4.9e-12 74.3 49 53.1
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 4.9e-12 74.3 44 56.8
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 4.9e-12 74.3 44 56.8
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 4.9e-12 74.3 42 61.9
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 8.4e-12 73.6 51 52.9
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 8.4e-12 73.6 45 57.8
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.1e-11 73.2 64 43.8
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 1.1e-11 73.2 47 55.3
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.4e-11 72.8 42 59.5
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.4e-11 72.8 49 55.1
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.4e-11 72.8 49 55.1
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 2.4e-11 72.0 45 57.8
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 3.2e-11 71.6 42 59.5
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.2e-11 71.6 49 53.1
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.2e-11 71.6 55 50.9
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.4e-11 70.9 42 59.5
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 5.4e-11 70.9 51 49.0
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 5.4e-11 70.9 45 57.8
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.4e-11 70.9 42 61.9
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 5.4e-11 70.9 53 49.1
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 7.1e-11 70.5 49 51.0
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 7.1e-11 70.5 45 53.3
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 7.1e-11 70.5 42 57.1
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 7.1e-11 70.5 42 59.5
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 1.2e-10 69.7 72 37.5
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.6e-10 69.3 49 46.9
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.1e-10 68.9 42 57.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.1e-10 68.9 51 47.1
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 3.5e-10 68.2 42 54.8
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 6.0e-10 67.4 50 46.0
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 6.0e-10 67.4 42 52.4
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 6.0e-10 67.4 42 54.8
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 6.0e-10 67.4 73 37.0
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.3e-09 66.2 49 49.0
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.3e-09 66.2 86 38.4
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.3e-09 66.2 44 50.0
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 1.3e-09 66.2 42 57.1
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.7e-09 65.9 42 50.0
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 3.0e-09 65.1 46 50.0
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.0e-09 65.1 42 54.8
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 3.9e-09 64.7 42 50.0
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.9e-09 64.7 42 50.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 5.1e-09 64.3 42 50.0
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.1e-09 64.3 42 47.6
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 5.1e-09 64.3 42 50.0
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 6.6e-09 63.9 64 39.1
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 6.6e-09 63.9 42 47.6
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 6.6e-09 63.9 42 47.6
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 8.7e-09 63.5 42 50.0
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 8.7e-09 63.5 42 47.6
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.5e-08 62.8 42 45.2
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.5e-08 62.8 42 45.2
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 1.9e-08 62.4 42 47.6
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.9e-08 62.4 42 47.6
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.9e-08 62.4 44 50.0
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.9e-08 62.4 44 45.5
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 1.9e-08 62.4 42 47.6
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 2.5e-08 62.0 42 45.2
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.5e-08 62.0 42 45.2
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.5e-08 62.0 42 47.6
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.5e-08 62.0 42 47.6
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.5e-08 62.0 42 47.6
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 3.3e-08 61.6 50 42.0
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.3e-08 61.6 42 45.2
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.3e-08 61.6 42 47.6
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 4.3e-08 61.2 44 50.0
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 4.3e-08 61.2 42 45.2
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 5.6e-08 60.8 42 45.2
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 9.6e-08 60.1 42 47.6
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 9.6e-08 60.1 42 42.9
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.6e-07 59.3 42 45.2
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.8e-07 58.5 65 35.4
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 3.6e-07 58.2 42 42.9
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 6.2e-07 57.4 42 45.2
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.2e-07 57.4 44 47.7
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.2e-07 57.4 44 47.7


User provided reference genes

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