Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 0.0e+00 1129.8 640 100.0
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 1.9e-84 317.8 485 38.4
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 7.4e-84 315.8 482 37.3
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.3e-83 315.1 485 38.6
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 8.1e-83 312.4 482 38.2
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 8.1e-83 312.4 480 38.5
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.4e-82 311.6 486 37.4
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.8e-82 311.2 477 38.8
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.4e-82 310.8 485 38.1
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.1e-82 310.5 482 38.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 5.3e-82 309.7 482 38.0
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 2.6e-81 307.4 482 37.8
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.4e-81 307.0 482 36.7
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 3.4e-81 307.0 482 37.6
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 5.8e-81 306.2 487 38.0
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 7.6e-81 305.8 486 37.0
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.0e-80 305.4 484 37.6
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.0e-80 305.4 482 36.3
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.0e-80 305.4 481 37.2
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.3e-80 305.1 484 37.0
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.7e-80 304.7 482 37.6
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.7e-80 304.7 486 36.8
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.1e-79 302.0 482 37.3
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.4e-79 301.6 482 37.3
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.4e-79 301.6 482 37.1
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.9e-79 301.2 483 37.1
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 2.5e-79 300.8 482 37.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 3.2e-79 300.4 486 36.8
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 4.2e-79 300.1 486 36.8
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 5.5e-79 299.7 482 36.7
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 7.1e-79 299.3 483 37.3
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.3e-79 298.9 482 36.5
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.6e-78 298.1 486 36.6
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.6e-78 298.1 483 36.6
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.1e-78 297.7 482 34.9
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.7e-78 297.4 482 35.9
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 3.5e-78 297.0 497 36.8
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 3.5e-78 297.0 482 36.3
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 3.5e-78 297.0 484 38.0
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.5e-78 297.0 485 37.1
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.6e-78 296.6 482 36.5
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 4.6e-78 296.6 484 36.4
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 4.6e-78 296.6 482 36.5
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 7.9e-78 295.8 501 36.7
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.9e-78 295.8 482 36.3
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.3e-77 295.0 480 37.7
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.3e-77 295.0 506 36.4
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.0e-77 293.9 482 36.3
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 3.9e-77 293.5 475 38.1
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 5.1e-77 293.1 486 36.4
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 6.7e-77 292.7 485 38.1
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 6.7e-77 292.7 472 37.1
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 6.7e-77 292.7 482 37.6
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 8.7e-77 292.4 480 37.1
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.9e-76 291.2 478 36.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 2.5e-76 290.8 482 35.7
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 2.5e-76 290.8 482 37.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 4.3e-76 290.0 482 36.7
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 5.7e-76 289.7 486 36.4
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 9.6e-76 288.9 482 36.9
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.3e-75 288.5 488 36.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 4.8e-75 286.6 483 37.1
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 6.3e-75 286.2 485 36.5
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.1e-74 285.4 482 37.1
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.8e-74 284.6 482 36.5
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.4e-74 284.3 475 37.3
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 6.9e-74 282.7 473 36.2
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.0e-73 281.2 482 34.9
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 3.4e-73 280.4 483 35.6
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 4.5e-73 280.0 481 36.0
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.3e-72 278.5 484 35.7
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.2e-72 277.7 482 35.7
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.0e-72 276.6 482 35.7
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 6.5e-72 276.2 440 38.2
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.1e-71 275.4 478 34.5
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.2e-70 271.9 497 34.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.6e-70 271.6 517 34.6
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.7e-70 270.8 484 34.5
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.5e-70 270.4 517 35.0
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 3.0e-69 267.3 481 34.5
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 8.7e-69 265.8 443 36.3
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 5.7e-68 263.1 486 34.4
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 4.8e-67 260.0 450 36.4
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 3.1e-66 257.3 549 32.2
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 6.9e-66 256.1 482 33.2
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 4.5e-65 253.4 422 34.6
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 3.0e-61 240.7 449 34.3
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.3e-60 237.3 584 31.0
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.3e-60 236.9 483 33.3
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 4.1e-58 230.3 374 35.3
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 1.7e-56 224.9 366 36.6
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.2e-56 224.6 428 36.4
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 4.2e-55 220.3 527 30.9
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.2e-55 219.5 364 36.8
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.2e-54 218.8 486 33.3
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.6e-54 218.4 472 32.4
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 3.9e-53 213.8 371 35.8
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 3.9e-53 213.8 407 33.7
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 5.0e-48 196.8 372 33.6
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 5.0e-48 196.8 375 35.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.9e-47 194.9 525 29.1
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.3e-43 182.2 547 30.0
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.2e-43 181.4 202 46.5
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.1e-42 177.6 200 46.0
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 7.0e-42 176.4 201 46.8
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 6.3e-35 153.3 191 43.5
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 2.4e-26 124.8 145 43.4
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 2.7e-25 121.3 284 28.2
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 3.5e-17 94.4 203 32.0
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.5e-17 94.4 74 55.4
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.1e-15 89.4 80 51.2
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 5.6e-15 87.0 79 51.9
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-14 85.9 107 40.2
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 4.7e-14 84.0 84 45.2
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-12 79.0 84 46.4
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 4.4e-12 77.4 67 50.7
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.0e-10 70.1 77 44.2
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.2e-10 69.7 77 44.2
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.2e-10 69.7 77 44.2
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.2e-10 69.7 77 44.2
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.2e-10 69.7 77 44.2
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-09 69.3 77 44.2
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.7e-09 68.2 61 49.2
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-09 68.2 77 44.2
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-09 68.2 73 45.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.6e-09 67.4 77 41.6
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 7.8e-09 66.6 65 46.2
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-08 65.9 82 39.0
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 3.3e-07 61.2 65 44.6
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-06 59.3 68 42.6
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.6e-06 57.8 68 42.6


User provided reference genes

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