Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g28534 Chara braunii HOM05D007940 ORTHO05D010046 1.3e-63 246.5 149 100.0
SGA_v2.0_scaffold298G47684 Striga asiatica HOM05D007940 ORTHO05D010046 1.0e-12 77.4 82 48.8
Migut.M01978 Erythranthe guttata HOM05D007940 ORTHO05D010046 3.9e-12 75.5 82 48.8
Phvul.009G252500 Phaseolus vulgaris HOM05D007940 ORTHO05D010046 3.9e-12 75.5 82 43.9
SalBow6G6284 Salvia bowleyana HOM05D007940 ORTHO05D010046 3.9e-12 75.5 82 48.8
SalBow8G3130 Salvia bowleyana HOM05D007940 ORTHO05D010046 3.9e-12 75.5 82 48.8
Solyc11g020710.2 Solanum lycopersicum HOM05D007940 ORTHO05D010046 5.1e-12 75.1 83 47.0
Hma1.2p1_0040F.1_g025155 Hydrangea macrophylla HOM05D007940 ORTHO05D010046 1.5e-11 73.6 82 46.3
Sopen11g010730 Solanum pennellii HOM05D007940 ORTHO05D010046 1.5e-11 73.6 83 45.8
RcHm_v2.0_Chr5g0020061 Rosa chinensis HOM05D007940 ORTHO05D010046 3.3e-11 72.4 82 47.6
Zm00001eb107160 Zea mays HOM05D007940 ORTHO05D010046 3.3e-11 72.4 82 40.2
Cc09_g06150 Coffea canephora HOM05D007940 ORTHO05D010046 4.3e-11 72.0 84 44.0
Sc16g0011710 Simmondsia chinensis HOM05D007940 ORTHO05D010046 4.3e-11 72.0 87 42.5
Ca_01891_v3 Cicer arietinum L. HOM05D007940 ORTHO05D010046 5.6e-11 71.6 84 44.0
MD05G1252500 Malus domestica HOM05D007940 ORTHO05D010046 7.4e-11 71.2 82 45.1
Lalb_Chr07g0188831 Lupinus albus HOM05D007940 ORTHO05D010046 9.6e-11 70.9 84 45.2
Nn7g38154 Nelumbo nucifera HOM05D007940 ORTHO05D010046 9.6e-11 70.9 83 44.6
Mapoly0019s0110 Marchantia polymorpha HOM05D007940 ORTHO05D010046 1.3e-10 70.5 85 38.8
TPR.G22024 Trifolium pratense HOM05D007940 ORTHO05D010046 1.3e-10 70.5 84 42.9
Prupe.4G111600 Prunus persica HOM05D007940 ORTHO05D010046 1.6e-10 70.1 83 44.6
Actinidia33707 Actinidia chinensis HOM05D007940 ORTHO05D010046 2.1e-10 69.7 83 43.4
Lsat_1_v5_gn_5_23140 Lactuca sativa HOM05D007940 ORTHO05D010046 2.1e-10 69.7 85 44.7
Psat1g156840 Pisum sativum HOM05D007940 ORTHO05D010046 2.1e-10 69.7 84 41.7
MD10G1233500 Malus domestica HOM05D007940 ORTHO05D010046 3.7e-10 68.9 82 43.9
Manes.16G057400 Manihot esculenta HOM05D007940 ORTHO05D010046 6.2e-10 68.2 89 42.7
Medtr2g435250 Medicago truncatula HOM05D007940 ORTHO05D010046 6.2e-10 68.2 84 41.7
MELO3C021755.2 Cucumis melo HOM05D007940 ORTHO05D010046 8.1e-10 67.8 82 41.5
Sabra15G0137900 Salix brachista HOM05D007940 ORTHO05D010046 8.1e-10 67.8 82 40.2
Cfa019394 Carpinus fangiana HOM05D007940 ORTHO05D010046 1.1e-09 67.4 82 42.7
DCAR_003782 Daucus carota HOM05D007940 ORTHO05D010046 1.1e-09 67.4 83 43.4
Glyma.15G146300 Glycine max HOM05D007940 ORTHO05D010046 1.1e-09 67.4 85 38.8
Oeu008726.1 Olea europaea HOM05D007940 ORTHO05D010046 1.1e-09 67.4 85 40.0
Manes.16G056500 Manihot esculenta HOM05D007940 ORTHO05D010046 1.4e-09 67.0 82 42.7
Os07g0567500 Oryza sativa ssp. japonica HOM05D007940 ORTHO05D010046 1.4e-09 67.0 82 40.2
HanXRQChr04g0109371 Helianthus annuus HOM05D007940 ORTHO05D010046 1.8e-09 66.6 83 43.4
FAN16G1222 Fragaria x ananassa HOM05D007940 ORTHO05D010046 2.4e-09 66.2 82 43.9
Sed0008509 Sechium edule HOM05D007940 ORTHO05D010046 3.1e-09 65.9 82 42.7
Thecc.06G142100 Theobroma cacao HOM05D007940 ORTHO05D010046 3.1e-09 65.9 81 39.5
Potri.015G121500 Populus trichocarpa HOM05D007940 ORTHO05D010046 9.0e-09 64.3 82 39.0
ClCG01G009440 Citrullus lanatus HOM05D007940 ORTHO05D010046 1.2e-08 63.9 82 39.0
Atru.chr10.309 Acer truncatum HOM05D007940 ORTHO05D010046 3.4e-08 62.4 85 40.0
Aa31LG2G15120 Aethionema arabicum HOM05D007940 ORTHO05D010046 3.4e-08 62.4 87 37.9
SMO347G0336 Selaginella moellendorffii HOM05D007940 ORTHO05D010046 3.4e-08 62.4 82 35.4
CARHR030670 Cardamine hirsuta HOM05D007940 ORTHO05D010046 4.5e-08 62.0 87 37.9
Thhalv10009859m.g Eutrema salsugineum HOM05D007940 ORTHO05D010046 4.5e-08 62.0 87 37.9
BcaC05g27148 Brassica carinata HOM05D007940 ORTHO05D010046 5.8e-08 61.6 87 36.8
BcaC09g51575 Brassica carinata HOM05D007940 ORTHO05D010046 5.8e-08 61.6 87 36.8
BolC1t01151H Brassica oleracea HOM05D007940 ORTHO05D010046 5.8e-08 61.6 87 36.8
QL11p017779 Quercus lobata HOM05D007940 ORTHO05D010046 5.8e-08 61.6 82 39.0
Sp1g27000 Schrenkiella parvula HOM05D007940 ORTHO05D010046 5.8e-08 61.6 87 36.8
AT1G31175 Arabidopsis thaliana HOM05D007940 ORTHO05D010046 7.6e-08 61.2 87 36.8
A09p35060 Brassica napus HOM05D007940 ORTHO05D010046 9.9e-08 60.8 87 36.8
BraA09t39037Z Brassica rapa HOM05D007940 ORTHO05D010046 9.9e-08 60.8 87 36.8
AL1G49310 Arabidopsis lyrata HOM05D007940 ORTHO05D010046 1.3e-07 60.5 87 36.8
Duzib235G0199 Durio zibethinus HOM05D007940 ORTHO05D010046 1.3e-07 60.5 81 37.0
HPP92_017565 Vanilla planifolia HOM05D007940 ORTHO05D010046 1.7e-07 60.1 83 37.3
CANSAT35G1488 Cannabis sativa HOM05D007940 ORTHO05D010046 2.2e-07 59.7 83 38.6
Carub.0001s2958 Capsella rubella HOM05D007940 ORTHO05D010046 2.2e-07 59.7 87 36.8
CSS0023427 Camellia sinensis var. sinensis HOM05D007940 ORTHO05D010046 2.9e-07 59.3 75 42.7
BcaB07g32779 Brassica carinata HOM05D007940 ORTHO05D010046 3.8e-07 58.9 87 35.6
MBI02_g13338_MAGBIO Magnolia biondii HOM05D007940 ORTHO05D010046 4.9e-07 58.5 72 40.3
EL10Ac4g10315 Beta vulgaris HOM05D007940 ORTHO05D010046 2.4e-06 56.2 75 40.0


User provided reference genes

Program Settings